BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013935
         (1120 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   137   2e-48
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...   127   4e-46
gb|ABA91837.2| retrotransposon protein, putative, unclassified [...   127   4e-46
gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japo...   127   4e-46
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   137   5e-46

>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  137 bits (344), Expect(2) = 2e-48
 Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 3/253 (1%)
 Frame = -3

Query: 1100 SDHLAMLITL---NXXXXXXXXXKPFRFYNMWLRNDTCMPVIDNAWTLIMHDMSDLNVLH 930
            SDH  ++I L   N           FRF   WL  +    V+  AW  +   +  L V  
Sbjct: 469  SDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWD-VSAGLQGLPVHA 527

Query: 929  RIKST*NSLNHWNKHVFGNIFTNIKNIQRELNAVLSKPFSITNYERAKILKSQLFDWMVK 750
             +      L+ W+ +V G++   +K +++EL     +P S     R ++L+ +L     +
Sbjct: 528  SLAGVAAGLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQ 587

Query: 749  EEDLWKQKSTNH*IKEGGRNTRFFHLSTIYRRRKNRIEKLKTDEGEWSIGEEEVGVNIND 570
             +  WKQ++  + + +G RNT FFH S   RRR+NRI KL+ ++G W   EE+    I +
Sbjct: 588  VDIYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIE 647

Query: 569  YFSQIFASDHPQQNDQILDLFNPCITERENEILTAVPTNDMIWRVVKKLGSLKAPGPYGF 390
            +F Q+F S+  Q + ++LD+ +  ++   NE L A  T + +   +  +G LKAPGP G 
Sbjct: 648  FFKQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGM 707

Query: 389  QGVFFQKCWHIVG 351
               F++ CW +VG
Sbjct: 708  PAGFYKACWDVVG 720



 Score = 83.2 bits (204), Expect(2) = 2e-48
 Identities = 40/93 (43%), Positives = 56/93 (60%)
 Frame = -1

Query: 310  GILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYHINKIVSPFQ 131
            G +   +N+  I +IPK+  P+ I   RPISLCN CYK++SK+LANRLK  +  ++SP Q
Sbjct: 734  GAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVISPAQ 793

Query: 130  GAFIKGRSIGDNTGLACELNFSQYEKHEN*GGW 32
             AF+ GR I DN  +A E+      K     G+
Sbjct: 794  SAFVPGRLISDNILIADEMTHYMRNKRSGQVGY 826


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score =  127 bits (319), Expect(2) = 4e-46
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 3/263 (1%)
 Frame = -3

Query: 1100 SDHLAMLITL-NXXXXXXXXXKP-FRFYNMWLRNDTCMPVIDNAWTLIMHDMSDLNVLHR 927
            SDH  +++T  N         KP FRF   W R + C P+++NAW L +       V+  
Sbjct: 670  SDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGG-KVMDA 728

Query: 926  IKST*NSLNHWNKHVFGNIFTNIKNIQRELNAVLSKPFSITNYERAKILKSQLFDWMVKE 747
            I+    +L  W+K+  G++   IK  ++ L A    P S +   R  +LK +L     + 
Sbjct: 729  IREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQR 788

Query: 746  EDLWKQKSTNH*IKEGGRNTRFFHLSTIYRRRKNRIEKLKTDEGEWSIGEEEVGVNINDY 567
            E  W+Q++  H +++G RNT+FFH     R+++N+I+KL+ D+GE    E      I+++
Sbjct: 789  ELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEF 848

Query: 566  FSQIFASDHPQQNDQILDLFNPCITERENEILTAVPTNDMIWRVVKKLGSLKA-PGPYGF 390
            + Q+F +  P   D++L      +T   N+ L    T + I + +  +G LKA PG  G 
Sbjct: 849  YKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGM 908

Query: 389  QGVFFQKCWHIVGPSMVTFVQSF 321
              +F+++ W  VG  +V  V+ F
Sbjct: 909  PALFYKQFWECVGDDIVHEVKDF 931



 Score = 85.1 bits (209), Expect(2) = 4e-46
 Identities = 44/85 (51%), Positives = 57/85 (67%)
 Frame = -1

Query: 328  KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYHINK 149
            K F   G +  S+N+T + +IPK+ NP+ I   RPISLCN  YKI SK+LANRLK  +++
Sbjct: 929  KDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSE 988

Query: 148  IVSPFQGAFIKGRSIGDNTGLACEL 74
            I+SP Q AF+  R I DN  LA EL
Sbjct: 989  IISPIQIAFVPQRMITDNILLAYEL 1013


>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1301

 Score =  127 bits (319), Expect(2) = 4e-46
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 3/263 (1%)
 Frame = -3

Query: 1100 SDHLAMLITL-NXXXXXXXXXKP-FRFYNMWLRNDTCMPVIDNAWTLIMHDMSDLNVLHR 927
            SDH  +++T  N         KP FRF   W R + C P+++NAW L +       V+  
Sbjct: 647  SDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGG-KVMDA 705

Query: 926  IKST*NSLNHWNKHVFGNIFTNIKNIQRELNAVLSKPFSITNYERAKILKSQLFDWMVKE 747
            I+    +L  W+K+  G++   IK  ++ L A    P S +   R  +LK +L     + 
Sbjct: 706  IREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQR 765

Query: 746  EDLWKQKSTNH*IKEGGRNTRFFHLSTIYRRRKNRIEKLKTDEGEWSIGEEEVGVNINDY 567
            E  W+Q++  H +++G RNT+FFH     R+++N+I+KL+ D+GE    E      I+++
Sbjct: 766  ELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEF 825

Query: 566  FSQIFASDHPQQNDQILDLFNPCITERENEILTAVPTNDMIWRVVKKLGSLKA-PGPYGF 390
            + Q+F +  P   D++L      +T   N+ L    T + I + +  +G LKA PG  G 
Sbjct: 826  YKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGM 885

Query: 389  QGVFFQKCWHIVGPSMVTFVQSF 321
              +F+++ W  VG  +V  V+ F
Sbjct: 886  PALFYKQFWECVGDDIVHEVKDF 908



 Score = 85.1 bits (209), Expect(2) = 4e-46
 Identities = 44/85 (51%), Positives = 57/85 (67%)
 Frame = -1

Query: 328  KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYHINK 149
            K F   G +  S+N+T + +IPK+ NP+ I   RPISLCN  YKI SK+LANRLK  +++
Sbjct: 906  KDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSE 965

Query: 148  IVSPFQGAFIKGRSIGDNTGLACEL 74
            I+SP Q AF+  R I DN  LA EL
Sbjct: 966  IISPIQIAFVPQRMITDNILLAYEL 990


>gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
          Length = 825

 Score =  127 bits (319), Expect(2) = 4e-46
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 3/263 (1%)
 Frame = -3

Query: 1100 SDHLAMLITL-NXXXXXXXXXKP-FRFYNMWLRNDTCMPVIDNAWTLIMHDMSDLNVLHR 927
            SDH  +++T  N         KP FRF   W R + C P+++NAW L +       V+  
Sbjct: 171  SDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGG-KVMDA 229

Query: 926  IKST*NSLNHWNKHVFGNIFTNIKNIQRELNAVLSKPFSITNYERAKILKSQLFDWMVKE 747
            I+    +L  W+K+  G++   IK  ++ L A    P S +   R  +LK +L     + 
Sbjct: 230  IREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQR 289

Query: 746  EDLWKQKSTNH*IKEGGRNTRFFHLSTIYRRRKNRIEKLKTDEGEWSIGEEEVGVNINDY 567
            E  W+Q++  H +++G RNT+FFH     R+++N+I+KL+ D+GE    E      I+++
Sbjct: 290  ELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEF 349

Query: 566  FSQIFASDHPQQNDQILDLFNPCITERENEILTAVPTNDMIWRVVKKLGSLKA-PGPYGF 390
            + Q+F +  P   D++L      +T   N+ L    T + I + +  +G LKA PG  G 
Sbjct: 350  YKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGM 409

Query: 389  QGVFFQKCWHIVGPSMVTFVQSF 321
              +F+++ W  VG  +V  V+ F
Sbjct: 410  PALFYKQFWECVGDDIVHEVKDF 432



 Score = 85.1 bits (209), Expect(2) = 4e-46
 Identities = 44/85 (51%), Positives = 57/85 (67%)
 Frame = -1

Query: 328 KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYHINK 149
           K F   G +  S+N+T + +IPK+ NP+ I   RPISLCN  YKI SK+LANRLK  +++
Sbjct: 430 KDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSE 489

Query: 148 IVSPFQGAFIKGRSIGDNTGLACEL 74
           I+SP Q AF+  R I DN  LA EL
Sbjct: 490 IISPIQIAFVPQRMITDNILLAYEL 514


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  137 bits (345), Expect(2) = 5e-46
 Identities = 74/261 (28%), Positives = 129/261 (49%)
 Frame = -3

Query: 1100 SDHLAMLITLNXXXXXXXXXKPFRFYNMWLRNDTCMPVIDNAWTLIMHDMSDLNVLHRIK 921
            SDH  +L+            K F+F  MWL  + C  +++ AW    +  +  ++ +R+ 
Sbjct: 222  SDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEAW----NGSAGEDITNRLD 277

Query: 920  ST*NSLNHWNKHVFGNIFTNIKNIQRELNAVLSKPFSITNYERAKILKSQLFDWMVKEED 741
                SL+ W    FGN+    K     LN +  +    +  E+ +I+   L +    EE 
Sbjct: 278  EVSRSLSTWATKTFGNLKKRKKEALTLLNGLQQRDPDASTLEQCRIVSGDLDEIHRLEES 337

Query: 740  LWKQKSTNH*IKEGGRNTRFFHLSTIYRRRKNRIEKLKTDEGEWSIGEEEVGVNINDYFS 561
             W  ++  + I++G +NT++FH     R+R+N I +L  + G W  G EE+   +  YF 
Sbjct: 338  YWHARARANEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFE 397

Query: 560  QIFASDHPQQNDQILDLFNPCITERENEILTAVPTNDMIWRVVKKLGSLKAPGPYGFQGV 381
             +FA+D P   +  L+  + C++   N  L  +P+ D +   +  +   KAPG  G   +
Sbjct: 398  GLFATDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHAL 457

Query: 380  FFQKCWHIVGPSMVTFVQSFF 318
            FFQK WHI+G  +++FVQS++
Sbjct: 458  FFQKFWHILGSDVISFVQSWW 478



 Score = 74.7 bits (182), Expect(2) = 5e-46
 Identities = 40/85 (47%), Positives = 51/85 (60%)
 Frame = -1

Query: 289 NETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYHINKIVSPFQGAFIKGR 110
           N+T I +IPK  +P  +  FRPISLC   YKI+SK LANRLK  +  I+SP Q AF+  R
Sbjct: 488 NKTCIVLIPKCDHPQSMKDFRPISLCTVLYKILSKTLANRLKVILPAIISPNQSAFVPRR 547

Query: 109 SIGDNTGLACELNFSQYEKHEN*GG 35
            I DN  +A E+  +   K  N  G
Sbjct: 548 LITDNALVAFEIFHAMKRKDANKNG 572