BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013867
         (245 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group] g...   113   1e-23
ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [S...   113   1e-23
ref|NP_001131695.1| uncharacterized protein LOC100193056 [Zea ma...   111   5e-23
emb|CBI40586.3| unnamed protein product [Vitis vinifera]              106   2e-21
ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III s...   106   2e-21

>ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group]
           gi|50251233|dbj|BAD27819.1| putative DNA-directed RNA
           polymerase III [Oryza sativa Japonica Group]
           gi|50251924|dbj|BAD27861.1| putative DNA-directed RNA
           polymerase II [Oryza sativa Japonica Group]
           gi|113537239|dbj|BAF09622.1| Os02g0672700 [Oryza sativa
           Japonica Group] gi|215708708|dbj|BAG93977.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215765354|dbj|BAG87051.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 110

 Score =  113 bits (283), Expect = 1e-23
 Identities = 46/81 (56%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 RLFCPTCPYICEIENKIKRRQPLVKKTIEPIFNSKDEMKTAKKTSVNCPDCNSIEAYFIE 64
           R +CPTCPY+C ++NKI ++  LVKK +EPIF+  D MK A KT+  CP C + EAY+ +
Sbjct: 23  RFYCPTCPYVCPVKNKIVKKARLVKKEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQ 82

Query: 63  FQTRSADEPMSRFYRCCNDEC 1
            Q RSADEPMS FY+CC +EC
Sbjct: 83  MQIRSADEPMSTFYKCCREEC 103


>ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
           gi|241934323|gb|EES07468.1| hypothetical protein
           SORBIDRAFT_04g032090 [Sorghum bicolor]
          Length = 166

 Score =  113 bits (283), Expect = 1e-23
 Identities = 49/81 (60%), Positives = 61/81 (75%)
 Frame = -3

Query: 243 RLFCPTCPYICEIENKIKRRQPLVKKTIEPIFNSKDEMKTAKKTSVNCPDCNSIEAYFIE 64
           RLFC  CPY+C I+NKI ++  LVKK +EPIF++ DEMK+A KT+V C  CN  EAYF +
Sbjct: 79  RLFCSVCPYVCPIQNKIVKKARLVKKEVEPIFSTADEMKSAPKTAVTCQRCNHGEAYFKQ 138

Query: 63  FQTRSADEPMSRFYRCCNDEC 1
            Q RSADEPM+  YRCC +EC
Sbjct: 139 MQIRSADEPMTTIYRCCKEEC 159


>ref|NP_001131695.1| uncharacterized protein LOC100193056 [Zea mays]
           gi|194692264|gb|ACF80216.1| unknown [Zea mays]
           gi|195653763|gb|ACG46349.1| hypothetical protein [Zea
           mays] gi|413923417|gb|AFW63349.1| hypothetical protein
           ZEAMMB73_646152 [Zea mays]
          Length = 110

 Score =  111 bits (278), Expect = 5e-23
 Identities = 49/81 (60%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 RLFCPTCPYICEIENKIKRRQPLVKKTIEPIFNSKDEMKTAKKTSVNCPDCNSIEAYFIE 64
           RLFCP CPY+C I NKI ++  LVKK +EPI ++ DEMK+A KT+V C  CN  EAYF +
Sbjct: 23  RLFCPVCPYVCPILNKIVKKARLVKKEVEPISSTADEMKSAPKTAVTCQRCNHGEAYFKQ 82

Query: 63  FQTRSADEPMSRFYRCCNDEC 1
            Q RSADEPM+  YRCC +EC
Sbjct: 83  MQIRSADEPMTTIYRCCKEEC 103


>emb|CBI40586.3| unnamed protein product [Vitis vinifera]
          Length = 175

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = -3

Query: 243 RLFCPTCPYICEIENK--IKRRQPLVKKTIEPIFNSKDEMKTAKKTSVNCPDCNSIEAYF 70
           R FCPTCPY+C IE K  IKR+Q LVKK IEPIF SKD+MK    T   CP CN  +A F
Sbjct: 87  RFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIF-SKDDMKNGPTTDATCPHCNFGKAVF 145

Query: 69  IEFQTRSADEPMSRFYRCCNDEC 1
            + QTRSADEPMS FY C N+ C
Sbjct: 146 QQLQTRSADEPMSTFYWCLNENC 168


>ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
           [Vitis vinifera]
          Length = 111

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
 Frame = -3

Query: 243 RLFCPTCPYICEIENK--IKRRQPLVKKTIEPIFNSKDEMKTAKKTSVNCPDCNSIEAYF 70
           R FCPTCPY+C IE K  IKR+Q LVKK IEPIF SKD+MK    T   CP CN  +A F
Sbjct: 23  RFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIF-SKDDMKNGPTTDATCPHCNFGKAVF 81

Query: 69  IEFQTRSADEPMSRFYRCCNDEC 1
            + QTRSADEPMS FY C N+ C
Sbjct: 82  QQLQTRSADEPMSTFYWCLNENC 104