BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013842
         (1398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arab...   158   5e-40
ref|NP_192643.2| RNA recognition motif-containing protein [Arabi...   158   1e-39
dbj|BAD43393.1| putative protein [Arabidopsis thaliana]               157   2e-39
ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   167   6e-39
ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor...   167   6e-39

>ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
           lyrata] gi|297318197|gb|EFH48619.1| hypothetical protein
           ARALYDRAFT_489706 [Arabidopsis lyrata subsp. lyrata]
          Length = 300

 Score =  158 bits (400), Expect(2) = 5e-40
 Identities = 84/186 (45%), Positives = 123/186 (66%), Gaps = 8/186 (4%)
 Frame = +1

Query: 277 STTEHTLVESPTT-----VSEQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNVTNVELSMY 441
           +TT+  ++ES ++     V E+  KTRLIAQN+PW ST EDI++LF+K+GNV ++E+SM+
Sbjct: 67  TTTQDPVLESSSSSATEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVIDIEMSMH 126

Query: 442 NKDRNRGLAFITMGSXXXXXXXXXXXGTCEIDGRSVSVAYAKVRKTK---PRVITESTPK 612
            K+RNRGL FI M S            +C+ +GR + V YAK +K K   PR      P 
Sbjct: 127 KKERNRGLVFIEMASPDEAATALKSLESCDYEGRRLKVDYAKTKKKKTYAPREKPSPVPT 186

Query: 613 YDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEKAEEA 792
           ++LFVANL+++ ++K L EFF     +VVS EV +Q  P R+ +GYGFVSF++ ++AE A
Sbjct: 187 FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQENP-RRSSGYGFVSFKTKKQAEAA 245

Query: 793 IRDFQG 810
           + +FQG
Sbjct: 246 LIEFQG 251



 Score = 33.9 bits (76), Expect(2) = 5e-40
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 866 ELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSDNTE 997
           + MG+P+RLA S + +K Q+K+G+   E+  E +  E  +   E
Sbjct: 253 DFMGRPIRLAKSKQFVKLQAKEGLQPPEEEEEPSPSEAMTQEVE 296


>ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis
           thaliana] gi|51968384|dbj|BAD42884.1| putative protein
           [Arabidopsis thaliana] gi|51969486|dbj|BAD43435.1|
           putative protein [Arabidopsis thaliana]
           gi|51969588|dbj|BAD43486.1| putative protein
           [Arabidopsis thaliana] gi|51970774|dbj|BAD44079.1|
           putative protein [Arabidopsis thaliana]
           gi|62319325|dbj|BAD94588.1| hypothetical protein
           [Arabidopsis thaliana] gi|332657315|gb|AEE82715.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 304

 Score =  158 bits (400), Expect(2) = 1e-39
 Identities = 86/198 (43%), Positives = 124/198 (62%), Gaps = 10/198 (5%)
 Frame = +1

Query: 247 KTNLLVFQTPSTTEHTLVES-------PTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQK 405
           K+  L     +TT+  ++ES       P  V E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57  KSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 406 HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXXGTCEIDGRSVSVAYAKVRKTK- 582
           +G+V ++E+SM+ K+RNRGL FI M S            +CE +GR + V YAK +K K 
Sbjct: 117 YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 583 --PRVITESTPKYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 756
             PR      P ++LFVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177 YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 757 VSFRSMEKAEEAIRDFQG 810
           VSF++ ++AE A+ +FQG
Sbjct: 236 VSFKTKKQAEAALIEFQG 253



 Score = 32.3 bits (72), Expect(2) = 1e-39
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 866 ELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSDNTE 997
           + +G+P+RLA S + +K Q+K+G+   E+ AE    +  +   E
Sbjct: 255 DFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETMTQE 298


>dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
          Length = 304

 Score =  157 bits (398), Expect(2) = 2e-39
 Identities = 86/198 (43%), Positives = 123/198 (62%), Gaps = 9/198 (4%)
 Frame = +1

Query: 244 RKTNLLVFQTPSTTEHTLVES------PTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQK 405
           +  NL  + + +T E  L  S      P  V E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57  KSRNLTSYFSTTTQEPVLDSSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 406 HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXXGTCEIDGRSVSVAYAKVRKTK- 582
           +G+V ++E+SM+ K+RNRGL FI M S            +CE +GR + V YAK +K K 
Sbjct: 117 YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 583 --PRVITESTPKYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 756
             PR      P ++LFVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177 YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 757 VSFRSMEKAEEAIRDFQG 810
           VSF++ ++AE A+ +FQG
Sbjct: 236 VSFKTKKQAEAALIEFQG 253



 Score = 32.3 bits (72), Expect(2) = 2e-39
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 866 ELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSDNTE 997
           + +G+P+RLA S + +K Q+K+G+   E+ AE    +  +   E
Sbjct: 255 DFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETMTQE 298


>ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus] gi|449497014|ref|XP_004160289.1| PREDICTED: 31
           kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 300

 Score =  167 bits (423), Expect = 6e-39
 Identities = 88/190 (46%), Positives = 131/190 (68%), Gaps = 1/190 (0%)
 Frame = +1

Query: 244 RKTNLLVFQTPSTTEHTLVESPTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNVTN 423
           ++T+  VFQ  ST++   V SP+  +E+  +TRL+AQN+PW+ST EDI++LF+K+G V +
Sbjct: 69  KRTSTFVFQFASTSQDEAVSSPSD-TEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLD 127

Query: 424 VELSMYNKDRNRGLAFITMGSXXXXXXXXXXXGTCEIDGRSVSVAYAKVRKTKPRVITES 603
           VELSMYNK RNRGLAF+TMGS            + E +GR++ + YAK++K KP    + 
Sbjct: 128 VELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKP 187

Query: 604 TP-KYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEK 780
            P  ++LFVANL +  ++KDL EFF   + +VVSA++ +   P R+ +GYGFV+F++ + 
Sbjct: 188 KPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENP-RRSSGYGFVAFKTKKD 246

Query: 781 AEEAIRDFQG 810
           AE AI +FQG
Sbjct: 247 AEAAISEFQG 256


>ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
           max]
          Length = 315

 Score =  167 bits (423), Expect = 6e-39
 Identities = 93/193 (48%), Positives = 120/193 (62%), Gaps = 2/193 (1%)
 Frame = +1

Query: 238 TKRKTNLLVFQTPSTTEHTLVESPTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNV 417
           TK+  NL    T ++T     E P    E+  +TRL+AQN+PW ST EDI+ LF+KHG V
Sbjct: 57  TKQTLNLT--PTHASTSEQQTEEPLVSEEEFSRTRLLAQNVPWTSTPEDIRTLFEKHGKV 114

Query: 418 TNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXXGTCEIDGRSVSVAYA--KVRKTKPRV 591
             VELSMY K+RNRGLAF+ MGS            + E +GR + V YA  K  KT P  
Sbjct: 115 LEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTAPPP 174

Query: 592 ITESTPKYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRS 771
           +      ++LFVANLS++  SKDL EFF      VVSAEV Y+  P R+P+GYGFVSF+S
Sbjct: 175 VKPKVVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNP-RRPSGYGFVSFKS 233

Query: 772 MEKAEEAIRDFQG 810
            ++AE A+ +FQG
Sbjct: 234 KKEAEAALAEFQG 246