BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013805
         (1166 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, ...   434   e-119
ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, ...   431   e-118
ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Po...   430   e-118
gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]      429   e-118
ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, ...   429   e-118

>ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
            vinifera] gi|297738533|emb|CBI27778.3| unnamed protein
            product [Vitis vinifera]
          Length = 259

 Score =  434 bits (1117), Expect = e-119
 Identities = 209/261 (80%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
 Frame = -3

Query: 1068 MALSIASTAVANLPLRE-SRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLWF 892
            MALSIASTA ++LP RE S +H  R          R  + ATKGVSSVC PLPPDRPLWF
Sbjct: 1    MALSIASTAFSSLPTREVSSKHFPRKLTTWLPG--RVRLNATKGVSSVCEPLPPDRPLWF 58

Query: 891  PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 712
            PGSSPPEWLDGSLPGDFGFDPLGLGSDPE LRWFAQAEL+H RWAMLAVAGILIPE LE 
Sbjct: 59   PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLER 118

Query: 711  LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 532
            LGFIENFSWY+AG  E++ D TTLFVVQL LMGW EGRRWADL+NPGCVDI L  PN+  
Sbjct: 119  LGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAK 178

Query: 531  PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 352
            P PDVGYPGG WFDP MWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF FQAIYTGE PIE
Sbjct: 179  PKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIE 238

Query: 351  NLMAHIADPGHCNIFSAFTSQ 289
            NLMAHIADPGHCN+FSAFTSQ
Sbjct: 239  NLMAHIADPGHCNVFSAFTSQ 259


>ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
            [Glycine max]
          Length = 260

 Score =  431 bits (1109), Expect = e-118
 Identities = 203/259 (78%), Positives = 224/259 (86%), Gaps = 1/259 (0%)
 Frame = -3

Query: 1068 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 892
            MAL+++STA+++LP RE RQ         C  L RRT   ATKGVS+VC PLPPDRPLWF
Sbjct: 1    MALALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWF 60

Query: 891  PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 712
            PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE 
Sbjct: 61   PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLER 120

Query: 711  LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 532
            +G+IENFSWY+AGT EY+ D TTLFVVQ+ LMGW EGRRWAD+VNPG VDI+ K+P+  N
Sbjct: 121  IGYIENFSWYDAGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTN 180

Query: 531  PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 352
            P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE
Sbjct: 181  PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240

Query: 351  NLMAHIADPGHCNIFSAFT 295
            NLMAH+ADPGHCNIFSAFT
Sbjct: 241  NLMAHLADPGHCNIFSAFT 259


>ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
            gi|222833488|gb|EEE71965.1| light-harvesting complex I
            protein Lhca6 [Populus trichocarpa]
          Length = 261

 Score =  430 bits (1105), Expect = e-118
 Identities = 199/261 (76%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = -3

Query: 1068 MALSIASTAVANLPLR--ESRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLW 895
            MAL+ AS+++++LP R  +  Q      I  C  ++   V ATKGVSSVC PLPPDRPLW
Sbjct: 1    MALNFASSSLSSLPTRTRDKPQKSLLGKIEKCQAVK-VRVNATKGVSSVCEPLPPDRPLW 59

Query: 894  FPGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLE 715
            FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+HGRWAMLA AGILIPEWLE
Sbjct: 60   FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWLE 119

Query: 714  SLGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRK 535
             LGFI+NF+W++AGT EY+ D TTLFVVQL+LMGW EGRRWAD++ PGCVDID KLP++ 
Sbjct: 120  RLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKT 179

Query: 534  NPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPI 355
             P PDVGYPGG WFDP  WGRGSPEPVM +RTKEIKNGRLAMLAF+GFWFQAIYTGE PI
Sbjct: 180  KPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239

Query: 354  ENLMAHIADPGHCNIFSAFTS 292
            +NLMAHIADPGHCNIFSAFTS
Sbjct: 240  DNLMAHIADPGHCNIFSAFTS 260


>gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 261

 Score =  429 bits (1104), Expect = e-118
 Identities = 198/261 (75%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = -3

Query: 1068 MALSIASTAVANLPLR--ESRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLW 895
            MAL+ AS+++++LP R  +  Q      I  C  ++   V ATKGVSSVC PLPPDRPLW
Sbjct: 1    MALNFASSSLSSLPTRTRDKPQKSLLGKIEKCQAVK-VRVNATKGVSSVCEPLPPDRPLW 59

Query: 894  FPGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLE 715
            FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+HGRWAMLA AGILIPEWLE
Sbjct: 60   FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWLE 119

Query: 714  SLGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRK 535
             LGFI+NF+W++AGT EY+ D TTLFVVQL+LMGW EGRRWAD++ PGCVDID KLP++ 
Sbjct: 120  RLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKT 179

Query: 534  NPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPI 355
             P PD+GYPGG WFDP  WGRGSPEPVM +RTKEIKNGRLAMLAF+GFWFQAIYTGE PI
Sbjct: 180  KPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239

Query: 354  ENLMAHIADPGHCNIFSAFTS 292
            +NLMAHIADPGHCNIFSAFTS
Sbjct: 240  DNLMAHIADPGHCNIFSAFTS 260


>ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
            [Glycine max]
          Length = 260

 Score =  429 bits (1103), Expect = e-118
 Identities = 202/259 (77%), Positives = 223/259 (86%), Gaps = 1/259 (0%)
 Frame = -3

Query: 1068 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 892
            MAL+++STA+++LP RE RQ         C  L RRT   ATKGVS+VC PLPPDRPLWF
Sbjct: 1    MALALSSTALSSLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWF 60

Query: 891  PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 712
            PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE 
Sbjct: 61   PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEK 120

Query: 711  LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 532
            +G+IENFSWY+AG  EY+ D TTLFVVQ+ LMGW EGRRWAD+VNPG VDI+ K+P+  N
Sbjct: 121  IGYIENFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITN 180

Query: 531  PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 352
            P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE
Sbjct: 181  PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240

Query: 351  NLMAHIADPGHCNIFSAFT 295
            NLMAH+ADPGHCNIFSAFT
Sbjct: 241  NLMAHLADPGHCNIFSAFT 259