BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013779
         (1701 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...   584   e-164
ref|XP_002524769.1| pentatricopeptide repeat-containing protein,...   551   e-154
ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containi...   512   e-142
ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containi...   511   e-142
ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containi...   496   e-137

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
            [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
            protein product [Vitis vinifera]
          Length = 494

 Score =  584 bits (1505), Expect = e-164
 Identities = 286/433 (66%), Positives = 349/433 (80%)
 Frame = +2

Query: 143  LSNEVAQLCDELVSNQFDSKKVFGILEDKAVPLIRIYSNGSGFVSLLQKLKPWPLLALEV 322
            L  +V+QL DELV +  DS  V  +LE+K   L R YSNGS FV LL++L  WP LAL+V
Sbjct: 62   LRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRSYSNGSAFVELLKQLSSWPYLALQV 121

Query: 323  FNWRRKKCEAGLGMVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGAC 502
            FNWRR + +  + M  EEYAKGI++AGRTKNVDLAV LF EA++K IKT+STYNALMGA 
Sbjct: 122  FNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAVELFTEAANKQIKTTSTYNALMGAY 181

Query: 503  MYNDLPDKCQSLFRDLKREITCGPTIVTYNILLTVFGRLMLVDHMEATFRDIQNSNLTPN 682
            M N   +KCQ+LFRDLKRE +C PTIVTYNIL++VFGRLMLVDHMEATFR+I+   L+PN
Sbjct: 182  MCNGHAEKCQALFRDLKREASCSPTIVTYNILISVFGRLMLVDHMEATFREIKELELSPN 241

Query: 683  LNTYNHIISGYVTAWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYE 862
            ++TYN+II+GYVTAWMW  ME  +RTM+E  ++P+++THLLMLRGY+HSGNL+KME+TYE
Sbjct: 242  ISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDINTHLLMLRGYAHSGNLQKMEETYE 301

Query: 863  IVKDHINENEVPLIRAMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVILIKLYAQE 1042
            ++K H+N+ E+PLIRAMI AYCKSS  DRV K+ AL+KLIPE+EYR WLNV+LI++YAQE
Sbjct: 302  LIKGHVNDKEIPLIRAMICAYCKSSITDRVEKIGALMKLIPENEYRPWLNVMLIRVYAQE 361

Query: 1043 DLVDTMEIFIGQAFEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSL 1222
            D V+ ME  I +AFEH TSV T+ VMRSIIA+YFRC+AV+RL +FVKRAE  GW ICRSL
Sbjct: 362  DWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRCNAVDRLANFVKRAECGGWHICRSL 421

Query: 1223 YHCKMVMYSSANRLEEMENVLKEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMC 1402
            YHCKMVMY+S  RLEEME+VL EME  NF  TKKTF I+YKAYS W QR +V ++ G MC
Sbjct: 422  YHCKMVMYASQKRLEEMESVLNEMESSNFCCTKKTFWILYKAYSMWDQRHKVEQVKGLMC 481

Query: 1403 KHGFQIPSDYFSS 1441
            KHG+ IPSD   S
Sbjct: 482  KHGYGIPSDVLLS 494


>ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535953|gb|EEF37612.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 509

 Score =  551 bits (1421), Expect = e-154
 Identities = 275/476 (57%), Positives = 358/476 (75%), Gaps = 2/476 (0%)
 Frame = +2

Query: 2    KLISLFTEKEIDGYPKLINLFTEKGT--NRRIIHKTNRQRFIHKTEDVFLSNEVAQLCDE 175
            KL    T + +  +P +I+LF+ +    N+ I             ED  LS  V+ L DE
Sbjct: 43   KLARAHTSEPVSFFPNIISLFSRRFPVDNKAI-------------ED--LSKTVSHLRDE 87

Query: 176  LVSNQFDSKKVFGILEDKAVPLIRIYSNGSGFVSLLQKLKPWPLLALEVFNWRRKKCEAG 355
            LV +  DS K F +LE++   L R+ S+ S  V LL++L   P LA+EVFNWRRK+ E  
Sbjct: 88   LVQHAEDSDKFFRVLEEQGDSLFRMRSDRSALVELLRQLVSLPHLAVEVFNWRRKQTEWS 147

Query: 356  LGMVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQS 535
              M  EEYAKGITIAGR KNVDLA+ +F EA  K  K +  YNALMGA MYN   DKCQS
Sbjct: 148  TPMTHEEYAKGITIAGRAKNVDLAIEIFAEACSKRRKKTCIYNALMGAYMYNGHYDKCQS 207

Query: 536  LFRDLKREITCGPTIVTYNILLTVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGY 715
            LF D K+E   GP++VTYNIL++VFGR MLVDHMEATFR++ N N++PN++TYN++I+GY
Sbjct: 208  LFLDFKKEANIGPSVVTYNILISVFGRSMLVDHMEATFRELMNLNISPNVSTYNNLIAGY 267

Query: 716  VTAWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEV 895
            VTAWMW+DME+V++ M+EGP+ P + T+LLMLRGY+HSGN+EKME+ Y++V+DH+N NEV
Sbjct: 268  VTAWMWDDMEQVFQLMKEGPIYPHLDTYLLMLRGYAHSGNIEKMEEMYKLVQDHVNVNEV 327

Query: 896  PLIRAMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVILIKLYAQEDLVDTMEIFIG 1075
            PLIR MI AYCKSS  DR+ K+E LL+LIPE+EYR WLNV+LIK+YAQ++L++ ME  I 
Sbjct: 328  PLIRTMICAYCKSSITDRIKKIEELLRLIPEEEYRPWLNVLLIKVYAQQNLLEAMENKID 387

Query: 1076 QAFEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSA 1255
            +AF+H T++ TVG+MR+IIASYFRC+AV+RL  FVKRAE SGWRICRSLYHCKMVMY+S 
Sbjct: 388  EAFKHETTITTVGIMRTIIASYFRCNAVDRLADFVKRAECSGWRICRSLYHCKMVMYASE 447

Query: 1256 NRLEEMENVLKEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMCKHGFQIP 1423
             RL+EME+VL +ME FN   TKKTF+I+YKAY   G++ +V ++LG M KHG+++P
Sbjct: 448  KRLDEMESVLNDMENFNLGRTKKTFVILYKAYLMCGKKYKVEQVLGLMYKHGYEVP 503


>ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Cucumis sativus] gi|449494249|ref|XP_004159492.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g30780-like [Cucumis sativus]
          Length = 514

 Score =  512 bits (1319), Expect = e-142
 Identities = 255/433 (58%), Positives = 327/433 (75%)
 Frame = +2

Query: 143  LSNEVAQLCDELVSNQFDSKKVFGILEDKAVPLIRIYSNGSGFVSLLQKLKPWPLLALEV 322
            +  +V ++  EL+ N  DS K+  ILED    L+  +++GS FV LL++L   P LALEV
Sbjct: 81   MERKVLEVSHELILNSEDSNKIVKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEV 140

Query: 323  FNWRRKKCEAGLGMVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGAC 502
            FNWRR++      +  EEYAKGI +AG++K++DLAV LF EAS+K +K +STYNALMG  
Sbjct: 141  FNWRRRQ-GGSFPLTVEEYAKGIAVAGKSKHIDLAVGLFNEASNKRVKATSTYNALMGVF 199

Query: 503  MYNDLPDKCQSLFRDLKREITCGPTIVTYNILLTVFGRLMLVDHMEATFRDIQNSNLTPN 682
            M+N L DKC S+FRDLKR+  C P IVTYNIL++VFGRLMLVDHMEAT R+I N NL+PN
Sbjct: 200  MFNGLADKCNSVFRDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPN 259

Query: 683  LNTYNHIISGYVTAWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYE 862
            +NTYN +I+GY+TAWMW+ ME+ +  M+   + P   T LLMLRGY+HS NLEKME+ + 
Sbjct: 260  VNTYNSLIAGYITAWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHH 319

Query: 863  IVKDHINENEVPLIRAMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVILIKLYAQE 1042
             +KDH+N+N  PLIRAMI AY +SS  D+V K++ALLKLIPE+EYR WLNV LI++YAQ 
Sbjct: 320  FLKDHVNKNNFPLIRAMIYAYSRSSITDKVHKIDALLKLIPEEEYRPWLNVKLIRVYAQA 379

Query: 1043 DLVDTMEIFIGQAFEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSL 1222
            D ++ ME  I +AFEH TSV TV VMRSIIASYFRC+AV++L +F+ RAE SGWRICRSL
Sbjct: 380  DCLERMENSINEAFEHGTSVYTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSL 439

Query: 1223 YHCKMVMYSSANRLEEMENVLKEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMC 1402
            YHCKMVM++S NRLEEME VL EM+ FN D +KKTF I+YKAYS  G R +  +++  MC
Sbjct: 440  YHCKMVMFASQNRLEEMECVLDEMKNFNLDWSKKTFYILYKAYSTSGCRYKANQVVCRMC 499

Query: 1403 KHGFQIPSDYFSS 1441
            K G+ +P  + SS
Sbjct: 500  KLGYGVPVGWDSS 512


>ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Glycine max]
          Length = 442

 Score =  511 bits (1317), Expect = e-142
 Identities = 253/431 (58%), Positives = 321/431 (74%)
 Frame = +2

Query: 143  LSNEVAQLCDELVSNQFDSKKVFGILEDKAVPLIRIYSNGSGFVSLLQKLKPWPLLALEV 322
            L N+V  L +EL+ +  DS +V  IL+D    L R + NGS  + L+ +L   P LAL+V
Sbjct: 11   LINKVTILKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQV 70

Query: 323  FNWRRKKCEAGLGMVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGAC 502
            F+WRRK+  A   M   EY+KGI  AGR+ NVDLAV LFKEA+ KGIKT+ TYNALMGA 
Sbjct: 71   FSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGAF 130

Query: 503  MYNDLPDKCQSLFRDLKREITCGPTIVTYNILLTVFGRLMLVDHMEATFRDIQNSNLTPN 682
            M+N LPD CQSLF DLKR++TC P+I TYNILL+V+GRLMLVDHMEATF +IQ  NL  N
Sbjct: 131  MFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAMN 190

Query: 683  LNTYNHIISGYVTAWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYE 862
            + TYNH+I+GY+TAWMW+DME+V++ ++   V+P + THLLMLRGY++SGNLEKME+ Y 
Sbjct: 191  ICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMYS 250

Query: 863  IVKDHINENEVPLIRAMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVILIKLYAQE 1042
             ++DH+N  E+ LIR MI AYC+SS  DR+ K+E LLK IP+ EYR WLNV+LIKLYA+E
Sbjct: 251  FIRDHVNIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAKE 310

Query: 1043 DLVDTMEIFIGQAFEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSL 1222
            D +  ME  I +AFEH TS+ T G++R IIA+Y+RC+AVE+L +FV+RAE SGW ICRSL
Sbjct: 311  DWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRSL 370

Query: 1223 YHCKMVMYSSANRLEEMENVLKEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMC 1402
            YHCK+VMY S   L EM NVL+EME      +KKT  IMYKAY   GQ S V++ LG M 
Sbjct: 371  YHCKLVMYGSQMTLLEMHNVLEEMENVKLKCSKKTLWIMYKAYMSRGQISMVLKTLGQMF 430

Query: 1403 KHGFQIPSDYF 1435
            KHG+++P   F
Sbjct: 431  KHGYEVPLSAF 441


>ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Glycine max]
          Length = 504

 Score =  496 bits (1276), Expect = e-137
 Identities = 248/433 (57%), Positives = 319/433 (73%)
 Frame = +2

Query: 143  LSNEVAQLCDELVSNQFDSKKVFGILEDKAVPLIRIYSNGSGFVSLLQKLKPWPLLALEV 322
            L N+ + L +EL+    DS +V  IL+D +  LI+ + +GS  + L+ +L   P LAL+V
Sbjct: 74   LINKASILKNELIRESSDSARVLSILDDNSDTLIQRHPDGSVLLRLMNQLNSNPSLALQV 133

Query: 323  FNWRRKKCEAGLGMVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGAC 502
            F+WRRK+      M   EY+KGI  AGR+ NVDLAV LFKEA+ KGIKT+STYNALMGAC
Sbjct: 134  FSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTSTYNALMGAC 193

Query: 503  MYNDLPDKCQSLFRDLKREITCGPTIVTYNILLTVFGRLMLVDHMEATFRDIQNSNLTPN 682
            M N L D CQSLF DLKR+ TC P+I TYNILL+VFGRLMLVDHMEATFR+IQ    T N
Sbjct: 194  MSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSVFGRLMLVDHMEATFREIQKLTFTMN 253

Query: 683  LNTYNHIISGYVTAWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYE 862
            + TYNH+I+GY+TAWMW+DME V++ ++  PV+P + T++LMLRGY++SGNLEKME+ Y 
Sbjct: 254  ICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPNMKTYMLMLRGYANSGNLEKMEEIYS 313

Query: 863  IVKDHINENEVPLIRAMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVILIKLYAQE 1042
             + D ++  E+ LIR MI AY +SSD DR+ K+E LLK IP  EYR WLNV+LIKLYA+E
Sbjct: 314  FITDRVDIKEISLIRCMICAYSRSSDADRLKKIELLLKFIPGKEYRPWLNVLLIKLYAKE 373

Query: 1043 DLVDTMEIFIGQAFEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSL 1222
            D ++ ME  I +AFEH TS+ T G++R I+A+Y+R +AVE+L +FV+RAE SGW ICRS 
Sbjct: 374  DWLEKMENAINEAFEHGTSITTKGILRCIVATYYRYNAVEKLENFVRRAEISGWSICRSA 433

Query: 1223 YHCKMVMYSSANRLEEMENVLKEMERFNFDPTKKTFLIMYKAYSHWGQRSRVMRLLGTMC 1402
            YHCK+VMY S  +L  M NVL+EME  N + TKKT  IMYKAY   GQ S V++ LG M 
Sbjct: 434  YHCKLVMYGS--QLPLMHNVLEEMEMVNLECTKKTLWIMYKAYMRNGQSSMVLKTLGQMF 491

Query: 1403 KHGFQIPSDYFSS 1441
            KHG+++P   F S
Sbjct: 492  KHGYEVPLSAFPS 504