BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013760
         (1369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280236.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vit...   662   0.0  
emb|CBI19841.3| unnamed protein product [Vitis vinifera]              615   e-174
ref|XP_002510514.1| 5'->3' exoribonuclease, putative [Ricinus co...   611   e-172
ref|XP_002306919.1| predicted protein [Populus trichocarpa] gi|2...   600   e-169
ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [S...   586   e-165

>ref|XP_002280236.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera]
          Length = 1065

 Score =  662 bits (1709), Expect = 0.0
 Identities = 320/470 (68%), Positives = 372/470 (79%), Gaps = 15/470 (3%)
 Frame = +3

Query: 3    LREKSDVFNSGNVEEDKVKLGEAGWKERYYEEKFSAKTPDELEKIRKDVVLRYTEGLCWV 182
            LREKSD+FNS N EEDKVKLGEAGWKERYYEEKFS KTP+E E +R DVVL+YTEGLCWV
Sbjct: 520  LREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQEAMRNDVVLKYTEGLCWV 579

Query: 183  MHYYYEGVCSWRWFYPYHYAPFASDLKGLDRLEIEFDLGAPFKPFNQLMGVFPAASSHAL 362
            MHYYYEGVCSW+WFYPYHYAPFASDLK L +L I F+LG+PFKPFNQL+GVFPAASSHAL
Sbjct: 580  MHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHAL 639

Query: 363  PTHYRKLMSDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEIEKVEHTLT 542
            P  YRKLM+DPNSPIIDFYP DFEVDMNGKRFAWQGIAKLPFIDE RLLAE++K+EHTLT
Sbjct: 640  PEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLT 699

Query: 543  EDEARRNSMMFDMLFVSVSHPLSPYIFSLYDKCKDLSDKERIETEERLDPKASGGMNGYL 722
            E+E RRNS+MFDMLFV++SHPLSPYIFSL D+CK L+D ER E +E+LDP+ASGGMNGY+
Sbjct: 700  EEEFRRNSVMFDMLFVALSHPLSPYIFSLDDRCKKLTDNERTEVKEQLDPRASGGMNGYI 759

Query: 723  SVCSGDACPPMFRSPVMRMEDILNNQVLCAIYRLPDVHKHITRPPAGVIFPEKIVTVGDL 902
            S+C GD CPP+FRSP+  +EDI++NQV+CAIYRLPD HKHITRPP GV FP+KIV+VGDL
Sbjct: 760  SLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIVSVGDL 819

Query: 903  KPPPVLWHEDSGKKPWENGRQNPPGTISGRQLGEAAHRLVINSLQSRNDRIGI-DHMDVG 1079
            KP PVLWHED+G++PWENGRQN PGTISGRQLGEAAHRLV+NSLQ + +R G  D M   
Sbjct: 820  KPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAERNGFGDQMHAP 879

Query: 1080 PSYPAGPY--VASSHPNGRHHNQQYIRPVPPRADYFSHT-------STILHPSDPGYDQQ 1232
            P YPA PY    SS+ + R+HNQ++ R   PR DY   T       +++ +  D  YDQ 
Sbjct: 880  PPYPAAPYGPPLSSYSDNRYHNQEHHRMALPRPDYSDQTYRRSSNPASVRNHFDHRYDQP 939

Query: 1233 GVLSSPHHSYGRSS-----QPRYGRNNMPATDTRDQRMHGYSPGSVQNGG 1367
               S+  H Y RS      QP + +N+ P    R Q    + P   Q  G
Sbjct: 940  HASSATGHHYNRSPVHGYYQPGFHQNDGPGYHPR-QEAQTHIPAGAQLPG 988


>emb|CBI19841.3| unnamed protein product [Vitis vinifera]
          Length = 870

 Score =  615 bits (1587), Expect = e-174
 Identities = 280/345 (81%), Positives = 316/345 (91%)
 Frame = +3

Query: 3    LREKSDVFNSGNVEEDKVKLGEAGWKERYYEEKFSAKTPDELEKIRKDVVLRYTEGLCWV 182
            LREKSD+FNS N EEDKVKLGEAGWKERYYEEKFS KTP+E E +R DVVL+YTEGLCWV
Sbjct: 520  LREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQEAMRNDVVLKYTEGLCWV 579

Query: 183  MHYYYEGVCSWRWFYPYHYAPFASDLKGLDRLEIEFDLGAPFKPFNQLMGVFPAASSHAL 362
            MHYYYEGVCSW+WFYPYHYAPFASDLK L +L I F+LG+PFKPFNQL+GVFPAASSHAL
Sbjct: 580  MHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHAL 639

Query: 363  PTHYRKLMSDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEIEKVEHTLT 542
            P  YRKLM+DPNSPIIDFYP DFEVDMNGKRFAWQGIAKLPFIDE RLLAE++K+EHTLT
Sbjct: 640  PEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLT 699

Query: 543  EDEARRNSMMFDMLFVSVSHPLSPYIFSLYDKCKDLSDKERIETEERLDPKASGGMNGYL 722
            E+E RRNS+MFDMLFV++SHPLSPYIFSL D+CK L+D ER E +E+LDP+ASGGMNGY+
Sbjct: 700  EEEFRRNSVMFDMLFVALSHPLSPYIFSLDDRCKKLTDNERTEVKEQLDPRASGGMNGYI 759

Query: 723  SVCSGDACPPMFRSPVMRMEDILNNQVLCAIYRLPDVHKHITRPPAGVIFPEKIVTVGDL 902
            S+C GD CPP+FRSP+  +EDI++NQV+CAIYRLPD HKHITRPP GV FP+KIV+VGDL
Sbjct: 760  SLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIVSVGDL 819

Query: 903  KPPPVLWHEDSGKKPWENGRQNPPGTISGRQLGEAAHRLVINSLQ 1037
            KP PVLWHED+G++PWENGRQN PGTISGRQLGEAAHRLV+NSLQ
Sbjct: 820  KPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQ 864


>ref|XP_002510514.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223551215|gb|EEF52701.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 1113

 Score =  611 bits (1575), Expect = e-172
 Identities = 306/464 (65%), Positives = 364/464 (78%), Gaps = 10/464 (2%)
 Frame = +3

Query: 3    LREKSDVFNSGNVEEDKVKLGEAGWKERYYEEKFSAKTPDELEKIRKDVVLRYTEGLCWV 182
            LREKSD FNS N EEDK++LG+ GWKERYYEEKFS KTP+ELE IR+DVVLRYTEGLCWV
Sbjct: 533  LREKSDAFNSKNPEEDKIRLGDPGWKERYYEEKFSGKTPEELEDIRRDVVLRYTEGLCWV 592

Query: 183  MHYYYEGVCSWRWFYPYHYAPFASDLKGLDRLEIEFDLGAPFKPFNQLMGVFPAASSHAL 362
            MHYYYEGVCSW+WFYPYHYAPFASDLK L +L+I+F+LG+PFKPFNQL+GVFPAASSHAL
Sbjct: 593  MHYYYEGVCSWQWFYPYHYAPFASDLKHLGQLDIKFELGSPFKPFNQLLGVFPAASSHAL 652

Query: 363  PTHYRKLMSDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEIEKVEHTLT 542
            P HYRKLMSDPNSPIIDFYP DFEVDMNGKR+AWQGIAKLPFIDE RLLAE++K+EHTLT
Sbjct: 653  PVHYRKLMSDPNSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEVRLLAEVKKIEHTLT 712

Query: 543  EDEARRNSMMFDMLFVSVSHPLSPYIFSLYDKCKDLSDKERIETEERLDPKASGGMNGYL 722
            E+EARRNS MFDMLFV  SH L+  I+ L + CK L+D+ER+E +ER++P+ S GMNGY+
Sbjct: 713  EEEARRNSAMFDMLFVLSSHSLAESIYLLDNNCKQLTDRERVEVKERINPELSDGMNGYI 772

Query: 723  SVCSGDACPPMFRSPVMRMEDILNNQVLCAIYRLPDVHKHITRPPAGVIFPEKIVTVGDL 902
            S CSGD  PP+FRSPV  MEDIL+N V+CAIYRLPD HKH+TRPPAGVIFP+KIV V DL
Sbjct: 773  SPCSGDTHPPIFRSPVAGMEDILDNGVICAIYRLPDPHKHVTRPPAGVIFPKKIVNVVDL 832

Query: 903  KPPPVLWHEDSGKKPWENGRQNPPGTISGRQLGEAAHRLVINSLQSRNDRIG-IDHMDVG 1079
            KP PVLWHEDSG+KPWE+ R+NPPGTISGRQLGEA+HRLV+NSLQ + D  G  +H+   
Sbjct: 833  KPDPVLWHEDSGRKPWESDRRNPPGTISGRQLGEASHRLVVNSLQMKVDHNGYANHLHAP 892

Query: 1080 -PSYPAGPYVA--SSHPNGRHHNQQYIRPVPPRADYFSHT------STILHPSDPGYDQQ 1232
             P Y A  +V   SS+ NG  H+ +  R   PR DY SH       +   + ++ GY Q 
Sbjct: 893  IPPYAATAHVPVHSSYANG-SHDPRRDRTGQPRMDY-SHAGQNRFFNPTQYNNNHGYGQS 950

Query: 1233 GVLSSPHHSYGRSSQPRYGRNNMPATDTRDQRMHGYSPGSVQNG 1364
               +SP +++   S+P+Y R N   ++ +  R     P   QNG
Sbjct: 951  --YASPGNAHFSGSRPQYEREN--RSNGQHSRQVYLQPEFHQNG 990


>ref|XP_002306919.1| predicted protein [Populus trichocarpa] gi|222856368|gb|EEE93915.1|
            predicted protein [Populus trichocarpa]
          Length = 998

 Score =  600 bits (1547), Expect = e-169
 Identities = 304/451 (67%), Positives = 349/451 (77%), Gaps = 16/451 (3%)
 Frame = +3

Query: 3    LREKSDVFNSGNVEEDKVKLGEAGWKERYYEEKFSAKTPDELEKIRKDVVLRYTEGLCWV 182
            LREKSDVFNS N EEDKVKLGE GWKERYYEEKFSAK+ DE+E +R+DVVLRYTEGLCWV
Sbjct: 522  LREKSDVFNSKNHEEDKVKLGEPGWKERYYEEKFSAKSLDEMEAVRRDVVLRYTEGLCWV 581

Query: 183  MHYYYEGVCSWRWFYPYHYAPFASDLKGLDRLEIEFDLGAPFKPFNQLMGVFPAASSHAL 362
            MHYYYEGVCSW+WFYPYHYAPFASDL  L +L I F+LG+PFKPFNQL+GVFPAASSHAL
Sbjct: 582  MHYYYEGVCSWQWFYPYHYAPFASDLTDLGQLNISFELGSPFKPFNQLLGVFPAASSHAL 641

Query: 363  PTHYRKLMSDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEIEKVEHTLT 542
            P HYRKLM+DPNSPI DFYP DFEVDMNGKRFAWQGIAKLPFIDE RLLAE++K+EHTLT
Sbjct: 642  PVHYRKLMTDPNSPIFDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLT 701

Query: 543  EDEARRNSMMFDMLFVSVSHPLSPYIFSLYDKCKDLSDKERIETEERLDPKASGGMNGYL 722
            E+EARRNSMMFDMLFVS SHPLS  I+ L + CK L+DKER+E +ER++P+ S GMNGYL
Sbjct: 702  EEEARRNSMMFDMLFVSSSHPLSESIYLLDNHCKQLTDKERVEVKERINPELSDGMNGYL 761

Query: 723  SVCSGDACPPMFRSPVMRMEDILNNQVLCAIYRLPDVHKHITRPPAGVIFPEKIVTVGDL 902
            S C+GD  PP+FRSPV+ MEDIL N+V+C IYRLPD HKHIT PP GVIFP+KIV  GDL
Sbjct: 762  SPCAGDTHPPIFRSPVVGMEDILANEVICVIYRLPDPHKHITYPPVGVIFPKKIVDQGDL 821

Query: 903  KPPPVLWHEDSGKKPWENGRQ----NPPGTISGRQLGEAAHRLVINSLQSRNDRIGIDHM 1070
            KP PVLWHE+SG++PWEN R+    NP GTI+GR LGEA+HRLV NSL  + DR G  + 
Sbjct: 822  KPDPVLWHEESGRRPWENDRRNPHGNPHGTIAGRHLGEASHRLVANSLHLKGDRNGYSNH 881

Query: 1071 DVGP-----SYPAGPYVASSHPNGRHHNQQYIRPVPPRADYFSH------TSTILHP-SD 1214
              GP     + P GP + SS+ NG  HNQ     + PR DY SH      TS  + P  D
Sbjct: 882  MHGPPQPYIAAPRGPPL-SSYSNGL-HNQGPHGTLRPRGDY-SHAGYPRSTSPRIPPHHD 938

Query: 1215 PGYDQQGVLSSPHHSYGRSSQPRYGRNNMPA 1307
             GY +    + P+ SY     P+Y   N  A
Sbjct: 939  RGYVEPYASAGPNPSYS-GRLPQYESENRSA 968


>ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [Sorghum bicolor]
            gi|241929576|gb|EES02721.1| hypothetical protein
            SORBIDRAFT_03g010040 [Sorghum bicolor]
          Length = 1066

 Score =  586 bits (1510), Expect = e-165
 Identities = 288/450 (64%), Positives = 344/450 (76%), Gaps = 18/450 (4%)
 Frame = +3

Query: 3    LREKSDVFNSGNVEEDKVKLGEAGWKERYYEEKFSAKTPDELEKIRKDVVLRYTEGLCWV 182
            LREKSD+FNS N +EDKVKLGE GW+ERYYEEKF A+TP+++E+IR+DVVL+YTEGLCWV
Sbjct: 519  LREKSDIFNSDNPDEDKVKLGEPGWRERYYEEKFGARTPEQIEEIRRDVVLKYTEGLCWV 578

Query: 183  MHYYYEGVCSWRWFYPYHYAPFASDLKGLDRLEIEFDLGAPFKPFNQLMGVFPAASSHAL 362
            MHYYYEGVCSW+WFYPYHYAPFASDL GL +L I+F+LG PFKPF+QLMGVFPAAS+HAL
Sbjct: 579  MHYYYEGVCSWQWFYPYHYAPFASDLSGLGQLNIKFELGTPFKPFDQLMGVFPAASAHAL 638

Query: 363  PTHYRKLMSDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEIEKVEHTLT 542
            P  YR+LM+DP+SPIIDFYPIDFEVDMNGKR++WQGIAKLPFIDE RLLAEI+KVEHTLT
Sbjct: 639  PLQYRQLMTDPHSPIIDFYPIDFEVDMNGKRYSWQGIAKLPFIDEARLLAEIKKVEHTLT 698

Query: 543  EDEARRNSMMFDMLFVSVSHPLSPYIFSLYDKCKDLSDKERIETEERLDPKASGGMNGYL 722
             +EARRNS+MFDMLFV+ SHPLSPYI+SL  K   L DK+R E +E+LDP ASGGMNGY+
Sbjct: 699  PEEARRNSIMFDMLFVNGSHPLSPYIYSLNSKFGHLPDKKRNEIKEKLDPSASGGMNGYI 758

Query: 723  SVCSGDACPPMFRSPVMRMEDILNNQVLCAIYRLPDVHKHITRPPAGVIFPEKIVTVGDL 902
            ++CSGD CPP+FRSPV  +EDI++NQV+C+IY+LPD HKHI RPP GVI P+K V  GDL
Sbjct: 759  TLCSGDPCPPIFRSPVDGLEDIMDNQVICSIYKLPDHHKHIARPPVGVIIPKKTVEAGDL 818

Query: 903  KPPPVLWHEDSGKKPWEN-GRQNPPGTISGRQLGEAAHRLVINSLQSRNDRIGIDHMDVG 1079
            KPPPVLWHEDSG++P +N  RQNPPG ISGRQLGEAAHRLVINSL ++            
Sbjct: 819  KPPPVLWHEDSGRRPHDNSNRQNPPGAISGRQLGEAAHRLVINSLNAQG----------- 867

Query: 1080 PSYPAGPYVASSHP-----NGRHHNQQYIRPV-----PPRA-------DYFSHTSTILHP 1208
                 G +  +S P     NG HH    + PV     PPR         ++    ++ + 
Sbjct: 868  ----RGQHGGTSMPYQTIMNGLHH-LNVMPPVSSQGMPPRVGQSAGPPGWYVPRGSVSNG 922

Query: 1209 SDPGYDQQGVLSSPHHSYGRSSQPRYGRNN 1298
              P Y   G   S H+ Y RS   +Y + N
Sbjct: 923  QPPAYASSG---SGHYQYERSGPSQYEQGN 949