BLASTX nr result

ID: Coptis25_contig00013520 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013520
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280761.1| PREDICTED: uncharacterized protein LOC100266...   136   2e-30
ref|XP_002280751.1| PREDICTED: uncharacterized protein LOC100266...   136   2e-30
ref|XP_003610894.1| hypothetical protein MTR_5g008220 [Medicago ...   129   2e-28
ref|XP_002299432.1| predicted protein [Populus trichocarpa] gi|2...   127   1e-27
ref|XP_002518899.1| conserved hypothetical protein [Ricinus comm...   123   2e-26

>ref|XP_002280761.1| PREDICTED: uncharacterized protein LOC100266795 isoform 2 [Vitis
           vinifera]
          Length = 260

 Score =  136 bits (343), Expect = 2e-30
 Identities = 62/90 (68%), Positives = 71/90 (78%)
 Frame = +3

Query: 3   AIGTCVLNSLVFPLPKXXXXXXXXXXXXXXARFAVMGIISFIPYFNWLSWIFAWLDTGSK 182
           AIG C+LNSLVFP+                ARFAVMGIISFIPYFNWLSW+FAW+DTG +
Sbjct: 63  AIGACMLNSLVFPITSGADDDGDTVIDSTDARFAVMGIISFIPYFNWLSWVFAWMDTGKR 122

Query: 183 RYVVYSIVYLAPYLRTNLSLSPEESWLPIA 272
           RY++YSIVYLAPYLR+NLSL PE+SWLPIA
Sbjct: 123 RYIIYSIVYLAPYLRSNLSLLPEDSWLPIA 152


>ref|XP_002280751.1| PREDICTED: uncharacterized protein LOC100266795 isoform 1 [Vitis
           vinifera] gi|147827011|emb|CAN62288.1| hypothetical
           protein VITISV_034705 [Vitis vinifera]
           gi|297742428|emb|CBI34577.3| unnamed protein product
           [Vitis vinifera]
          Length = 252

 Score =  136 bits (343), Expect = 2e-30
 Identities = 62/90 (68%), Positives = 71/90 (78%)
 Frame = +3

Query: 3   AIGTCVLNSLVFPLPKXXXXXXXXXXXXXXARFAVMGIISFIPYFNWLSWIFAWLDTGSK 182
           AIG C+LNSLVFP+                ARFAVMGIISFIPYFNWLSW+FAW+DTG +
Sbjct: 63  AIGACMLNSLVFPITSGADDDGDTVIDSTDARFAVMGIISFIPYFNWLSWVFAWMDTGKR 122

Query: 183 RYVVYSIVYLAPYLRTNLSLSPEESWLPIA 272
           RY++YSIVYLAPYLR+NLSL PE+SWLPIA
Sbjct: 123 RYIIYSIVYLAPYLRSNLSLLPEDSWLPIA 152


>ref|XP_003610894.1| hypothetical protein MTR_5g008220 [Medicago truncatula]
           gi|355512229|gb|AES93852.1| hypothetical protein
           MTR_5g008220 [Medicago truncatula]
          Length = 255

 Score =  129 bits (325), Expect = 2e-28
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = +3

Query: 3   AIGTCVLNSLVFPLPKXXXXXXXXXXXXXXARFAVMGIISFIPYFNWLSWIFAWLDTGSK 182
           AIG C+L SL+ P+P                R AVMGI+SFIPYFNWLSW+FAWLDTG++
Sbjct: 66  AIGACMLTSLILPVPVATEEEEESSLTSTDTRLAVMGIMSFIPYFNWLSWVFAWLDTGNR 125

Query: 183 RYVVYSIVYLAPYLRTNLSLSPEESWLPIA 272
           RY VYS+VYLAPYLR+NLS+SPE+SWLPIA
Sbjct: 126 RYAVYSLVYLAPYLRSNLSISPEDSWLPIA 155


>ref|XP_002299432.1| predicted protein [Populus trichocarpa] gi|222846690|gb|EEE84237.1|
           predicted protein [Populus trichocarpa]
          Length = 213

 Score =  127 bits (318), Expect = 1e-27
 Identities = 59/92 (64%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
 Frame = +3

Query: 3   AIGTCVLNSLVFP--LPKXXXXXXXXXXXXXXARFAVMGIISFIPYFNWLSWIFAWLDTG 176
           AIG C+L+SL+ P  + K               RFAVMG+ISFIPYFNWLSW+FAWLDTG
Sbjct: 61  AIGLCMLSSLLLPNTVTKDEEAESYSGITTTDTRFAVMGVISFIPYFNWLSWVFAWLDTG 120

Query: 177 SKRYVVYSIVYLAPYLRTNLSLSPEESWLPIA 272
            +RY +YS+VYLAPYLR+N+SLSPEESWLPIA
Sbjct: 121 KRRYAIYSLVYLAPYLRSNMSLSPEESWLPIA 152


>ref|XP_002518899.1| conserved hypothetical protein [Ricinus communis]
           gi|223541886|gb|EEF43432.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 248

 Score =  123 bits (308), Expect = 2e-26
 Identities = 55/90 (61%), Positives = 66/90 (73%)
 Frame = +3

Query: 3   AIGTCVLNSLVFPLPKXXXXXXXXXXXXXXARFAVMGIISFIPYFNWLSWIFAWLDTGSK 182
           AIG C+L+SL+ P                 AR   MGIISF+PYFNWLSW+FAWLDTG +
Sbjct: 62  AIGACMLSSLLLPNAVNTDDDGDSAIDSTDARLTAMGIISFVPYFNWLSWVFAWLDTGKR 121

Query: 183 RYVVYSIVYLAPYLRTNLSLSPEESWLPIA 272
           RY VY++VYLAPYLR+N+SLSPEESWLP+A
Sbjct: 122 RYAVYALVYLAPYLRSNMSLSPEESWLPVA 151


Top