BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013486
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...    87   2e-15
emb|CBI35191.3| unnamed protein product [Vitis vinifera]               86   2e-15
ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat...    86   2e-15
ref|XP_002526170.1| pentatricopeptide repeat-containing protein,...    86   2e-15

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 46/94 (48%), Positives = 63/94 (67%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           +F  LS   L+P+  TY VMI+G  K G+LE A+DLF  M+EKG A N  TFN +++GF 
Sbjct: 505 LFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDL 6
            Q ++  K ++LL  M +K FSPDA T S++VDL
Sbjct: 565 -QNDEMQKVVELLQEMAEKDFSPDASTISIVVDL 597



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 52/95 (54%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           +F  +  R + PD   Y+ +I+G    G+ E A+ LF EM ++G   N  TFN+++   L
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDA-L 318

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDLF 3
            +     +A  LL +M+ +G SPD  T + L+D F
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/93 (30%), Positives = 52/93 (55%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           ++  +  +E+ P   TYN ++ G F+EGK+ +A +LF EM+         T+NI++ G L
Sbjct: 400 LYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDG-L 458

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVD 9
            + N   +AM+L + + +  F P  +  + L+D
Sbjct: 459 CKNNHLSEAMELFHYLENHDFQPSIQIFNCLID 491



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = -3

Query: 254 PDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFLDQKNDTHKAMQ 75
           PDT TYN +I+GF  EG++++A+DLF  M+ KG   +  ++N+++ G+  +     +A +
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYC-KSGRMVEAKK 399

Query: 74  LLNIMLDKGFSPDAKT-TSLLVDLF 3
           L   M+ K   P   T  +LL  LF
Sbjct: 400 LYREMMCKEIMPTVITYNTLLTGLF 424


>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 44/94 (46%), Positives = 63/94 (67%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           +F  LS++ L PD  TY +MING  ++G L EA  LF EM E G + N  T+N++ +GFL
Sbjct: 461 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFL 520

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDL 6
            + N+T +A+QL   ML +GFS D  TT+LLV++
Sbjct: 521 -RNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEM 553


>emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/94 (47%), Positives = 64/94 (68%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           +F +LS++ LKP+  TYN+M +G  K G L+EA  LF EM E   +A+  T+N + QGFL
Sbjct: 137 LFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFL 196

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDL 6
            + N+T +A+QLL  ML +GFS D  TT+LLV +
Sbjct: 197 -RNNETSRAIQLLEEMLARGFSCDVSTTTLLVGM 229


>ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/94 (47%), Positives = 64/94 (68%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           +F +LS++ LKP+  TYN+M +G  K G L+EA  LF EM E   +A+  T+N + QGFL
Sbjct: 481 LFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFL 540

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDL 6
            + N+T +A+QLL  ML +GFS D  TT+LLV +
Sbjct: 541 -RNNETSRAIQLLEEMLARGFSCDVSTTTLLVGM 573


>ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534547|gb|EEF36246.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/95 (46%), Positives = 63/95 (66%)
 Frame = -3

Query: 287 IFYSLSTRELKPDTSTYNVMINGFFKEGKLEEAQDLFYEMQEKGFAANDFTFNIMVQGFL 108
           IF  + T  L P+  TYN+MING  KEGKL EA+ LF +M+E G   ++ +FN +++GFL
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFL 440

Query: 107 DQKNDTHKAMQLLNIMLDKGFSPDAKTTSLLVDLF 3
            Q+N   KAM+ L  M +K FSP+   T +LV+L+
Sbjct: 441 -QENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLY 474