BLASTX nr result
ID: Coptis25_contig00013273
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00013273
(493 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi... 196 1e-57
emb|CBI24272.3| unnamed protein product [Vitis vinifera] 196 1e-57
gb|AFG65804.1| Pinus taeda anonymous locus 2_9455_01 genomic seq... 152 2e-43
gb|AEW08424.1| Pinus taeda anonymous locus 2_9455_01 genomic seq... 152 2e-43
gb|AFG65809.1| Pinus taeda anonymous locus 2_9455_01 genomic seq... 151 5e-43
>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 196 bits (497), Expect(2) = 1e-57
Identities = 93/120 (77%), Positives = 109/120 (90%), Gaps = 1/120 (0%)
Frame = -3
Query: 473 RGLMKARGVTKPPGCSWIEVKRRVHSFIVGGTSHSLVDEISAKMNNLYSEIKEIGYVPDT 294
R LMK RGVTKPPGCSWIEVKR++HSF+VG TSH L+++ISAKM +LY +IKEIGYVPDT
Sbjct: 826 RCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDT 885
Query: 293 KYVLQNLEEDEKD-SLCGHSEKLAIAFGLISTPNGTPLRIIKNLRVCGDCHKATKFISKL 117
+VLQ+++EDEK+ SLCGHSEK+A+AFGLIST GTPLRIIKNLRVCGDCH ATKFISK+
Sbjct: 886 NFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKV 945
Score = 52.8 bits (125), Expect(2) = 1e-57
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 111 REIIMRDCYRFHHFVEGVCSCGDY 40
R+IIMRD YRFHHFV+GVCSCGDY
Sbjct: 948 RDIIMRDNYRFHHFVDGVCSCGDY 971
>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 196 bits (497), Expect(2) = 1e-57
Identities = 93/120 (77%), Positives = 109/120 (90%), Gaps = 1/120 (0%)
Frame = -3
Query: 473 RGLMKARGVTKPPGCSWIEVKRRVHSFIVGGTSHSLVDEISAKMNNLYSEIKEIGYVPDT 294
R LMK RGVTKPPGCSWIEVKR++HSF+VG TSH L+++ISAKM +LY +IKEIGYVPDT
Sbjct: 583 RCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDT 642
Query: 293 KYVLQNLEEDEKD-SLCGHSEKLAIAFGLISTPNGTPLRIIKNLRVCGDCHKATKFISKL 117
+VLQ+++EDEK+ SLCGHSEK+A+AFGLIST GTPLRIIKNLRVCGDCH ATKFISK+
Sbjct: 643 NFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKV 702
Score = 52.8 bits (125), Expect(2) = 1e-57
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 111 REIIMRDCYRFHHFVEGVCSCGDY 40
R+IIMRD YRFHHFV+GVCSCGDY
Sbjct: 705 RDIIMRDNYRFHHFVDGVCSCGDY 728
>gb|AFG65804.1| Pinus taeda anonymous locus 2_9455_01 genomic sequence
gi|383165802|gb|AFG65805.1| Pinus taeda anonymous locus
2_9455_01 genomic sequence gi|383165820|gb|AFG65814.1|
Pinus taeda anonymous locus 2_9455_01 genomic sequence
Length = 156
Score = 152 bits (385), Expect(2) = 2e-43
Identities = 72/120 (60%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Frame = -3
Query: 473 RGLMKARGVTKPPGCSWIEVKRRVHSFIVGGTSHSLVDEISAKMNNLYSEIKEIGYVPDT 294
R +MK +G+ K PGCSWIEV ++HSF+VG TSH +EI ++ L ++KE GY+PDT
Sbjct: 10 RRMMKDKGLKKQPGCSWIEVNNKMHSFVVGDTSHPQTEEIYTLLDALAGQMKEAGYLPDT 69
Query: 293 KYVLQNLEEDE-KDSLCGHSEKLAIAFGLISTPNGTPLRIIKNLRVCGDCHKATKFISKL 117
+VL ++EE++ KD LC HSEKLAIAFGLISTP T + + KNLRVCGDCH+ATKFISK+
Sbjct: 70 DFVLHDVEEEQKKDLLCHHSEKLAIAFGLISTPPWTSITVTKNLRVCGDCHRATKFISKV 129
Score = 48.5 bits (114), Expect(2) = 2e-43
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -2
Query: 123 QTLDREIIMRDCYRFHHFVEGVCSCGDY 40
+ + REIIMRD RFHHF +G+CSCGDY
Sbjct: 128 KVVGREIIMRDANRFHHFKDGLCSCGDY 155
>gb|AEW08424.1| Pinus taeda anonymous locus 2_9455_01 genomic sequence
gi|383165794|gb|AFG65801.1| Pinus taeda anonymous locus
2_9455_01 genomic sequence gi|383165798|gb|AFG65803.1|
Pinus taeda anonymous locus 2_9455_01 genomic sequence
gi|383165808|gb|AFG65808.1| Pinus taeda anonymous locus
2_9455_01 genomic sequence gi|383165812|gb|AFG65810.1|
Pinus taeda anonymous locus 2_9455_01 genomic sequence
gi|383165814|gb|AFG65811.1| Pinus taeda anonymous locus
2_9455_01 genomic sequence
Length = 156
Score = 152 bits (385), Expect(2) = 2e-43
Identities = 72/120 (60%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Frame = -3
Query: 473 RGLMKARGVTKPPGCSWIEVKRRVHSFIVGGTSHSLVDEISAKMNNLYSEIKEIGYVPDT 294
R +MK +G+ K PGCSWIEV ++HSF+VG TSH +EI ++ L ++KE GY+PDT
Sbjct: 10 RRMMKDKGLKKQPGCSWIEVNNKMHSFVVGDTSHPQTEEIYTLLDALAGQMKEAGYLPDT 69
Query: 293 KYVLQNLEEDE-KDSLCGHSEKLAIAFGLISTPNGTPLRIIKNLRVCGDCHKATKFISKL 117
+VL ++EE++ KD LC HSEKLAIAFGLISTP T + + KNLRVCGDCH+ATKFISK+
Sbjct: 70 DFVLHDVEEEQKKDLLCHHSEKLAIAFGLISTPPWTSITVTKNLRVCGDCHRATKFISKV 129
Score = 48.1 bits (113), Expect(2) = 2e-43
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -2
Query: 123 QTLDREIIMRDCYRFHHFVEGVCSCGDY 40
+ + REIIMRD RFHHF +G+CSCGDY
Sbjct: 128 KVVGREIIMRDSNRFHHFKDGLCSCGDY 155
>gb|AFG65809.1| Pinus taeda anonymous locus 2_9455_01 genomic sequence
Length = 156
Score = 151 bits (382), Expect(2) = 5e-43
Identities = 71/120 (59%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Frame = -3
Query: 473 RGLMKARGVTKPPGCSWIEVKRRVHSFIVGGTSHSLVDEISAKMNNLYSEIKEIGYVPDT 294
R +MK +G+ K PGCSWIEV ++HSF+VG TSH +EI ++ L ++KE GY+PDT
Sbjct: 10 RRMMKDKGLKKQPGCSWIEVNNKMHSFVVGDTSHPQTEEIYTLLDALAGQMKEAGYLPDT 69
Query: 293 KYVLQNLEEDE-KDSLCGHSEKLAIAFGLISTPNGTPLRIIKNLRVCGDCHKATKFISKL 117
+VL ++EE++ KD LC HSEKLAI+FGLISTP T + + KNLRVCGDCH+ATKFISK+
Sbjct: 70 DFVLHDVEEEQKKDLLCHHSEKLAISFGLISTPPWTSITVTKNLRVCGDCHRATKFISKV 129
Score = 48.1 bits (113), Expect(2) = 5e-43
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -2
Query: 123 QTLDREIIMRDCYRFHHFVEGVCSCGDY 40
+ + REIIMRD RFHHF +G+CSCGDY
Sbjct: 128 KVVGREIIMRDSNRFHHFKDGLCSCGDY 155