BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013256
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   151   6e-35
ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-l...   144   6e-33
ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-l...   143   1e-32
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   142   3e-32
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   142   4e-32

>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
           gi|223528261|gb|EEF30313.1| exosome complex exonuclease
           rrp43, putative [Ricinus communis]
          Length = 303

 Score =  151 bits (381), Expect = 6e-35
 Identities = 73/87 (83%), Positives = 81/87 (93%)
 Frame = -3

Query: 261 ALGAVASADGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGR 82
           ALGAV SADGSA+ KIG TTM+AAIKMEVMTP+SESP EGCIAIDFHMPPICSPL+RPGR
Sbjct: 52  ALGAVVSADGSAIAKIGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGR 111

Query: 81  PAEAAPVLSKQLTDIILSSEMVDLKEL 1
           PAEAAPV+SKQL+D I+SS M+DLKEL
Sbjct: 112 PAEAAPVVSKQLSDTIMSSAMIDLKEL 138


>ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
          Length = 299

 Score =  144 bits (364), Expect = 6e-33
 Identities = 70/86 (81%), Positives = 79/86 (91%)
 Frame = -3

Query: 258 LGAVASADGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRP 79
           LGAVASA+GSALVKIG TTML AIKMEVMTP+ ESP EGC+AIDFHMPPICSP++RPGRP
Sbjct: 53  LGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRP 112

Query: 78  AEAAPVLSKQLTDIILSSEMVDLKEL 1
           AEA+PV+SKQL+D I SS M+DLKEL
Sbjct: 113 AEASPVVSKQLSDTISSSRMIDLKEL 138


>ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
          Length = 302

 Score =  143 bits (361), Expect = 1e-32
 Identities = 69/86 (80%), Positives = 80/86 (93%)
 Frame = -3

Query: 258 LGAVASADGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGRP 79
           LGAVASA+GSALVKIG TT+L AIKMEVMTP+ ESP EGC+AIDFHMPPICSP++RPGRP
Sbjct: 53  LGAVASANGSALVKIGSTTILTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRP 112

Query: 78  AEAAPVLSKQLTDIILSSEMVDLKEL 1
           AEA+PV+SKQL+D I SS+M+DLKEL
Sbjct: 113 AEASPVVSKQLSDTISSSKMIDLKEL 138


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
           gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
           complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/87 (78%), Positives = 79/87 (90%)
 Frame = -3

Query: 261 ALGAVASADGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGR 82
           ALG V+SA+GSAL KIG TTMLAAIKMEVMTP+ ESP EGCIA+DFHMPP+CSP++RPGR
Sbjct: 53  ALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGR 112

Query: 81  PAEAAPVLSKQLTDIILSSEMVDLKEL 1
           PAEAAPV+SKQL+D I SS M+DL+EL
Sbjct: 113 PAEAAPVISKQLSDTISSSGMIDLREL 139


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
           tuberosum]
          Length = 314

 Score =  142 bits (357), Expect = 4e-32
 Identities = 72/87 (82%), Positives = 77/87 (88%)
 Frame = -3

Query: 261 ALGAVASADGSALVKIGHTTMLAAIKMEVMTPASESPGEGCIAIDFHMPPICSPLIRPGR 82
           ALGAVASADGSAL KIG TTMLAAIKMEVMTP  E P EG IAI+FHMPPICSPL+RPGR
Sbjct: 52  ALGAVASADGSALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGR 111

Query: 81  PAEAAPVLSKQLTDIILSSEMVDLKEL 1
           PAEAA V+SKQL+D ILSS M+DLKEL
Sbjct: 112 PAEAASVISKQLSDTILSSGMIDLKEL 138