BLASTX nr result
ID: Coptis25_contig00013067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00013067
(1935 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation... 485 e-134
ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation... 472 e-130
ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation... 468 e-129
ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation... 466 e-129
ref|XP_002323353.1| predicted protein [Populus trichocarpa] gi|2... 465 e-128
>ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
[Vitis vinifera]
Length = 946
Score = 485 bits (1249), Expect = e-134
Identities = 282/537 (52%), Positives = 349/537 (64%), Gaps = 29/537 (5%)
Frame = -2
Query: 1640 SDWETDEDDGIKYEKPQ---GDSWTKEMDKI-----RGYFEDPSKIVTFDMINNIF---I 1494
SD E DE+DG E G W K+M K + + +DPS+I T+D +N F +
Sbjct: 207 SDSEEDEEDGEDREDSAAEAGGGWEKKMSKKDKLMDKQFMKDPSEI-TWDTVNKKFKEIV 265
Query: 1493 ATRVRKGIARLEEIEQLTLLVEFAKIPAQKVDILVYIVWTQLKVVPR--GHVPVTVWKKC 1320
A R RKG R+E++EQLT L AK PAQK++IL +V Q V P GH+P+ VWKKC
Sbjct: 266 AVRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVVSAQFDVNPSLSGHMPINVWKKC 325
Query: 1319 MQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDGEVRIWRAALPDLYAWVAFEFCI 1140
+QNMLVI+DIL ++ I++DD E + KG + G +R+W + L + EF
Sbjct: 326 VQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKGTIRVWGNLVAFLER-IDVEFFK 384
Query: 1139 GLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRKDFVEAAIVARRMMEHLYYKPRE 960
L+ + Y E LR EP+ L+L+Q V YL+ R DF A+ VA R +E +YYKP+E
Sbjct: 385 SLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLE-RVGDFKAASKVALRRVELIYYKPQE 443
Query: 959 AYDAMRKLVEQTE---GGAVQVYWWP-------------TPSLISKHAQQRPTFPENDSA 828
YDAM+ L EQTE G + P TP ++ + +PTFPEN
Sbjct: 444 VYDAMKNLAEQTEDTENGESEAGEEPRVEESRGPPAFVVTPEVVPR----KPTFPENSRT 499
Query: 827 LMAELRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSRDLLLMSHLQDKVQHLDASTKI 648
LM L + I HG++ K AML IYHHAI DEFS +RDLLLMSHLQD VQH+D ST+I
Sbjct: 500 LMDILVSLIYNHGDERTKARAMLCDIYHHAILDEFSTARDLLLMSHLQDNVQHMDISTQI 559
Query: 647 LFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLLCQGVSDCSCHYKTQKQEIMEA 468
LFNR MAQLGLCAFR GLIAE H LSELY+ G +K+LL QGVS H KT +QE +E
Sbjct: 560 LFNRAMAQLGLCAFRVGLIAEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERIER 619
Query: 467 RNQMPYHTHINLELLEAVHLICAMLLEVPNMAVKTHDAKGKVISKTFRKLFEESQRQTFT 288
R QMPYH HINLELLE VHLICAMLLEVPNMA THDAK KVISKTFR+L E S+RQTFT
Sbjct: 620 RRQMPYHMHINLELLEGVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFT 679
Query: 287 PSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDNVLEMLMTKIKEVAL 117
P NV D+VMAA+RAL +GDF K+F++IKS DFW+ L NR++VLEML KIKE AL
Sbjct: 680 GPPENVRDHVMAATRALSKGDFQKAFDVIKSLDFWKLLRNREDVLEMLRAKIKEEAL 736
>ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
[Glycine max]
Length = 926
Score = 472 bits (1214), Expect = e-130
Identities = 272/553 (49%), Positives = 354/553 (64%), Gaps = 40/553 (7%)
Frame = -2
Query: 1655 DREFDSDWETDEDDGIKYEKPQGDS----------------WTKEMDKI-----RGYFED 1539
D E+DSD E + D ++ + + DS W +++ K R + ++
Sbjct: 184 DEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKN 243
Query: 1538 PSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLVEFAKIPAQKVDILVYIVWTQL 1368
PS+I T+D +N F +A R RKG R E++EQLT L + AK PAQK++IL +V Q
Sbjct: 244 PSEI-TWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQF 302
Query: 1367 KVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDGEVRI 1194
V P GH+P+ VWKKC+QNML+I+DIL + I++DDS E + KG +G +R+
Sbjct: 303 DVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNIMVDDSVEPDENETQKGAEHNGTIRV 362
Query: 1193 WRAALPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRKDFVE 1014
W + L + EF L+ + Y E LR EP L+L+Q V +YL+ R +F
Sbjct: 363 WGNLVAFLER-IDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLE-RVGNFKA 420
Query: 1013 AAIVARRMMEHLYYKPREAYDAMRKLVEQTEGG--------------AVQVYWWPTPSLI 876
A+ VA R +E +YYKP+E YDAMRKL E TE G + + TP ++
Sbjct: 421 ASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVV 480
Query: 875 SKHAQQRPTFPENDSALMAELRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSRDLLLM 696
++ +PTFPEN LM L + I K+G++ K AML IYHHA+ DEFS++RDLLLM
Sbjct: 481 TR----KPTFPENSRTLMDILVSMIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLM 536
Query: 695 SHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLLCQGVS 516
SHLQD VQH+D ST+ILFNR M+QLGLCAFR GLI+EAH LSELY+ G +K+LL QGVS
Sbjct: 537 SHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVS 596
Query: 515 DCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLLEVPNMAVKTHDAKGKVIS 336
H KT +QE +E R QMPYH HINLELLEAVHL+ AMLLEVPNMA HDAK KVIS
Sbjct: 597 QSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVIS 656
Query: 335 KTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDNV 156
KTFR+L E S++QTFT P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD V
Sbjct: 657 KTFRRLLEVSEKQTFTGPPENVRDHVMAATRILRKGDFQKAFDIIVSLDVWKFVRNRDTV 716
Query: 155 LEMLMTKIKEVAL 117
LEML KIKE AL
Sbjct: 717 LEMLKDKIKEEAL 729
>ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
[Glycine max]
Length = 925
Score = 468 bits (1205), Expect = e-129
Identities = 272/553 (49%), Positives = 351/553 (63%), Gaps = 40/553 (7%)
Frame = -2
Query: 1655 DREFDSDWETDEDDGIKYEKPQGDS----------------WTKEMDKI-----RGYFED 1539
+ E+DSD E + D ++ + + DS W +++ K R + ++
Sbjct: 183 EEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKN 242
Query: 1538 PSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLVEFAKIPAQKVDILVYIVWTQL 1368
PS+I T+D +N F +A R RKG R E++EQLT L + AK PAQK++IL +V Q
Sbjct: 243 PSEI-TWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQF 301
Query: 1367 KVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDGEVRI 1194
V P GHVP+ VWKKC+QNML+I+DIL + IV DD E + KG +G +R+
Sbjct: 302 DVNPGLNGHVPINVWKKCVQNMLIILDILVQYPNIVADDLVEPDENETQKGPEHNGTIRV 361
Query: 1193 WRAALPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRKDFVE 1014
W + L + EF L+ + Y E LR EP L+L+Q V +YL+ R +F
Sbjct: 362 WGNLVAFLER-IDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLE-RVGNFKA 419
Query: 1013 AAIVARRMMEHLYYKPREAYDAMRKLVEQTEGG--------------AVQVYWWPTPSLI 876
A+ VA R +E +YYKP+E YDAMRKL E TE G + + TP ++
Sbjct: 420 ASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVV 479
Query: 875 SKHAQQRPTFPENDSALMAELRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSRDLLLM 696
++ +PTFPEN LM L + I K+G++ K AML IYHHA+ DEFS +RDLLLM
Sbjct: 480 AR----KPTFPENSRTLMDVLVSMIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLM 535
Query: 695 SHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLLCQGVS 516
SHLQD VQH+D ST+ILFNR M+QLGLCAFR GLI+EAH LSELY+ G +K+LL QGVS
Sbjct: 536 SHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVS 595
Query: 515 DCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLLEVPNMAVKTHDAKGKVIS 336
H KT +QE +E R QMPYH HINLELLEAVHL+ AMLLEVPNMA HDAK KVIS
Sbjct: 596 QSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVIS 655
Query: 335 KTFRKLFEESQRQTFTPSPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDNV 156
KTFR+L E S++QTFT P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD V
Sbjct: 656 KTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLNKGDFQKAFDIIVSLDVWKFVRNRDTV 715
Query: 155 LEMLMTKIKEVAL 117
LEML KIKE AL
Sbjct: 716 LEMLKDKIKEEAL 728
>ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like
[Glycine max]
Length = 926
Score = 466 bits (1198), Expect(2) = e-129
Identities = 267/536 (49%), Positives = 348/536 (64%), Gaps = 25/536 (4%)
Frame = -2
Query: 1649 EFDSDWETDEDDGIKYEKPQGDSWTKEMDKI-----RGYFEDPSKIVTFDMINNIF---I 1494
E SD E + D K + G W +++ K + + +DPS+I T+D +N F +
Sbjct: 200 EAKSDSEASQYDNEKQDAGDGP-WDQKLSKKDRLLDKQFMKDPSEI-TWDTVNKKFKEVV 257
Query: 1493 ATRVRKGIARLEEIEQLTLLVEFAKIPAQKVDILVYIVWTQLKVVP--RGHVPVTVWKKC 1320
A R RKG R E++EQLT L + AK AQK++IL +V Q V P GH+P+ VWKKC
Sbjct: 258 AARGRKGTGRFEQVEQLTFLTKVAKTAAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKC 317
Query: 1319 MQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDGEVRIWRAALPDLYAWVAFEFCI 1140
+QNMLVI+DIL ++ IV+DDS E + KG++ +G +R+W + L + EF
Sbjct: 318 VQNMLVILDILVQHPNIVVDDSVEPDENETQKGVDYNGPIRVWGNLVAFLER-IDVEFFK 376
Query: 1139 GLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRKDFVEAAIVARRMMEHLYYKPRE 960
L+ + Y E LR EP+ L+L+Q V +YL+ R +F A+ VA R +E +YYKP+E
Sbjct: 377 SLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLE-RVGNFKAASKVALRRVELIYYKPQE 435
Query: 959 AYDAMRKLVEQTEGG---------------AVQVYWWPTPSLISKHAQQRPTFPENDSAL 825
Y AM+KL E TE G + + TP ++++ +PTFPEN +
Sbjct: 436 VYVAMKKLTELTEDGDNGVEASEEKGFEESRIPTAFVATPEVVAR----KPTFPENSRTI 491
Query: 824 MAELRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSRDLLLMSHLQDKVQHLDASTKIL 645
M L + I K+G++ K AML IYHHA+ DEFS++RDLLLMSHLQD VQH+D ST+IL
Sbjct: 492 MDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQIL 551
Query: 644 FNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLLCQGVSDCSCHYKTQKQEIMEAR 465
FNR M+QLGLCAFR GLI+EAH LSELY+ G +K+LL QGVS H KT +QE +E R
Sbjct: 552 FNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERR 611
Query: 464 NQMPYHTHINLELLEAVHLICAMLLEVPNMAVKTHDAKGKVISKTFRKLFEESQRQTFTP 285
QMPYH HINLELLE VHL+ AMLLEVPNMA HDAK K+ISKTFR+L E S RQTFT
Sbjct: 612 RQMPYHMHINLELLETVHLVSAMLLEVPNMAANVHDAKRKLISKTFRRLLEVSDRQTFTG 671
Query: 284 SPGNVCDYVMAASRALCQGDFHKSFNLIKSFDFWRFLGNRDNVLEMLMTKIKEVAL 117
P NV D+VMAA+R L +GDF K+F++I S D W+F+ NRD VLEML KIKE AL
Sbjct: 672 PPENVRDHVMAATRFLSKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEAL 727
Score = 23.5 bits (49), Expect(2) = e-129
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 97 YSSLSADLLTTWFNLP 50
Y SLS D LT +F+LP
Sbjct: 738 YESLSLDQLTKFFDLP 753
>ref|XP_002323353.1| predicted protein [Populus trichocarpa] gi|222867983|gb|EEF05114.1|
predicted protein [Populus trichocarpa]
Length = 895
Score = 465 bits (1197), Expect = e-128
Identities = 263/520 (50%), Positives = 345/520 (66%), Gaps = 17/520 (3%)
Frame = -2
Query: 1625 DEDDGIKYEKPQGDSWTKEMDKI-----RGYFEDPSKIVTFDMINNIF---IATRVRKGI 1470
+++D + + + W K M K + + +DPS+I T+D++N F +A R R+G
Sbjct: 192 EDEDNVDDQTEKDGGWEKMMSKKDKLMDKQFAKDPSEI-TWDIVNKKFKEIVAARGRRGT 250
Query: 1469 ARLEEIEQLTLLVEFAKIPAQKVDILVYIVWTQLKVVP--RGHVPVTVWKKCMQNMLVIV 1296
R E++EQLT L + AK PAQK++IL +V Q V P GH+P+ VWK C+QNML+I+
Sbjct: 251 GRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVSPGLSGHMPINVWKNCVQNMLIIL 310
Query: 1295 DILEENLKIVLDDSGEFGFEDISKGINCDGEVRIWRAALPDLYAWVAFEFCIGLKSARLE 1116
DILE+ IV+DD+ E + KG + +G +RIW + L + EF L+
Sbjct: 311 DILEQYPSIVVDDTVEPDENETQKGGDHNGPIRIWGNLVAFLER-IDSEFFKSLQCIDPH 369
Query: 1115 SWAYKEMLRCEPVLLLLSQKVFKYLQLRRKDFVEAAIVARRMMEHLYYKPREAYDAMRKL 936
+ Y E L+ EP+ L+L+Q +YL+ D AA VA + +E +YYKP+E YDAMRKL
Sbjct: 370 THEYVERLQDEPMFLVLAQNAQEYLE-HVGDLKAAAKVALKRVELIYYKPQEVYDAMRKL 428
Query: 935 VEQTEGGA------VQVYWWPTPSLI-SKHAQQRPTFPENDSALMAELRAFIDKHGNDAA 777
VEQTE G V+ + ++ S+ ++PTFPEN A+M L + I K G++
Sbjct: 429 VEQTEDGGNGEEPKVEGSRGSSAFVVTSELVPRKPTFPENSRAMMDALVSLIYKSGDERT 488
Query: 776 KVDAMLFAIYHHAINDEFSVSRDLLLMSHLQDKVQHLDASTKILFNRTMAQLGLCAFRAG 597
K AML IYHHA+ DE S SRDLLLMSHLQD +QH+D S++ILFNR MAQLGLCAFR G
Sbjct: 489 KARAMLCDIYHHALLDELSTSRDLLLMSHLQDNIQHMDISSQILFNRAMAQLGLCAFRVG 548
Query: 596 LIAEAHSYLSELYADGSIKKLLCQGVSDCSCHYKTQKQEIMEARNQMPYHTHINLELLEA 417
+I EAH L ELY+ G +K+LL QGVS H KTQ+QE +E R QMPYH HINLELLE+
Sbjct: 549 MITEAHGCLFELYSGGRVKELLAQGVSQSRYHEKTQEQERLERRRQMPYHMHINLELLES 608
Query: 416 VHLICAMLLEVPNMAVKTHDAKGKVISKTFRKLFEESQRQTFTPSPGNVCDYVMAASRAL 237
VHLICAMLLEVPNMA +DAK KVISKTFR+L E ++RQTFT P NV D+VMAA+RAL
Sbjct: 609 VHLICAMLLEVPNMAANIYDAKRKVISKTFRRLLEVTERQTFTGPPENVRDHVMAATRAL 668
Query: 236 CQGDFHKSFNLIKSFDFWRFLGNRDNVLEMLMTKIKEVAL 117
+GDF K+F++I S D W+ L +RD VLEML KIKE AL
Sbjct: 669 TKGDFQKAFDVINSLDVWKLLRDRDGVLEMLKAKIKEEAL 708