BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013039
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267486.1| PREDICTED: putative pentatricopeptide repeat...   128   4e-28
ref|XP_003554875.1| PREDICTED: uncharacterized protein LOC100816...   111   7e-23
ref|XP_004158095.1| PREDICTED: putative pentatricopeptide repeat...   107   1e-21
ref|XP_004135727.1| PREDICTED: putative pentatricopeptide repeat...   107   1e-21
ref|NP_173127.4| pentatricopeptide repeat-containing protein [Ar...   102   2e-20

>ref|XP_002267486.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g16830 [Vitis vinifera] gi|297735747|emb|CBI18434.3|
           unnamed protein product [Vitis vinifera]
          Length = 659

 Score =  128 bits (322), Expect = 4e-28
 Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499 SKLGRYTDAVDFFFSLLERNIQPDSYTFSSVLSILHVSQRIELLPRLIKEVSKYAASDVV 320
           SK+GRY DA+  FFSL +R + PDSYTFSS+LS + +SQR  LLP+L         +D+V
Sbjct: 342 SKVGRYDDALGIFFSLPKRKMVPDSYTFSSILSAICLSQRFSLLPKLFSS-GLEVHTDLV 400

Query: 319 VYNCLLSCVSKSRFSSHVVDIFNDMLYRGITPDWYSYIXXXXXXXXXXXLEKAIRVF--- 149
           V N LLS   K+ F S  V+ +NDML RG   D YS++           +++A+ V+   
Sbjct: 401 VCNSLLSYFCKAGFPSLAVEFYNDMLDRGFMIDQYSFVGLLSGLCGSGRVDEAVNVYSGI 460

Query: 148 VTNDLSHDVHVLTLMIAELIRLGRLDTAIRIFSKAVEEKFPLDVVSYTV 2
           + N    D H+ T++I  LI+ G+   A+R+F KA+ E++ LD VSYTV
Sbjct: 461 LVNHSDLDAHIHTVIIGGLIKAGKFHRAVRLFKKAMVERYTLDAVSYTV 509


>ref|XP_003554875.1| PREDICTED: uncharacterized protein LOC100816100 [Glycine max]
          Length = 1122

 Score =  111 bits (277), Expect = 7e-23
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499 SKLGRYTDAVDFFFSLLERNIQPDSYTFSSVLSILHVSQRIELLPRLIKEVSKYAASDVV 320
           SK GR  DA+  F SL ERN++PDSYTF+S+LS +  S+   LLP+L+  VS++  +D+V
Sbjct: 328 SKAGRCQDAIQVFLSLSERNLKPDSYTFASLLSTICRSRMFYLLPKLVL-VSRHIDADLV 386

Query: 319 VYNCLLSCVSKSRFSSHVVDIFNDMLYRGITPDWYSYIXXXXXXXXXXXLEKAIRVFVTN 140
             N LLS ++K+   S  V  ++ M+  G  PD Y++            ++KA+ V+   
Sbjct: 387 FCNALLSSLTKADLPSLAVGFYDHMIDEGFVPDKYTFAGLLSALCCAGRVDKAVNVYHGV 446

Query: 139 DLSH---DVHVLTLMIAELIRLGRLDTAIRIFSKAVEEKFPLDVVSYTV 2
            +S+   D H+ T++I  L++ G+   A+ +   AV  K+PLD V+YTV
Sbjct: 447 VMSYHDTDAHIHTVIIVGLLKTGKFHKAVSVLRFAVMNKYPLDTVAYTV 495


>ref|XP_004158095.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g16830-like [Cucumis sativus]
          Length = 525

 Score =  107 bits (266), Expect = 1e-21
 Identities = 63/169 (37%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499 SKLGRYTDAVDFFFSLLERNIQPDSYTFSSVLSILHVSQRIELLPRLIKEVSKYAASDVV 320
           +K  RY DA+  F SL +RNI PD YTFSS+L+ + +S+R+ LLP+L+         D+V
Sbjct: 256 AKNERYNDALSIFLSLHKRNILPDCYTFSSLLNTICLSKRLFLLPKLVD--GFLVEVDLV 313

Query: 319 VYNCLLSCVSKSRFSSHVVDIFNDMLYRGITPDWYSYIXXXXXXXXXXXLEKAIRVF--- 149
             N LLS + K+ F++  ++++N+M+  G+ PD YS +           + +A+R++   
Sbjct: 314 ACNSLLSYLGKAGFAALALELYNNMVNGGLMPDKYSVLGVLTGLCESRRIGEAVRLYNGI 373

Query: 148 VTNDLSHDVHVLTLMIAELIRLGRLDTAIRIFSKAVEEKFPLDVVSYTV 2
           + N    D H+ T++I  LI+ G+  +AIRIF + + E+  LDVVSY+V
Sbjct: 374 LLNYTGVDAHIHTVIIDGLIKAGKFHSAIRIFRRNLLEENSLDVVSYSV 422


>ref|XP_004135727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g16830-like [Cucumis sativus]
          Length = 665

 Score =  107 bits (266), Expect = 1e-21
 Identities = 63/169 (37%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499 SKLGRYTDAVDFFFSLLERNIQPDSYTFSSVLSILHVSQRIELLPRLIKEVSKYAASDVV 320
           +K  RY DA+  F SL +RNI PD YTFSS+L+ + +S+R+ LLP+L+         D+V
Sbjct: 348 AKNERYNDALSIFLSLHKRNILPDCYTFSSLLNTICLSKRLFLLPKLVD--GFLVEVDLV 405

Query: 319 VYNCLLSCVSKSRFSSHVVDIFNDMLYRGITPDWYSYIXXXXXXXXXXXLEKAIRVF--- 149
             N LLS + K+ F++  ++++N+M+  G+ PD YS +           + +A+R++   
Sbjct: 406 ACNSLLSYLGKAGFAALALELYNNMVNGGLMPDKYSVLGVLTGLCESRRIGEAVRLYNGI 465

Query: 148 VTNDLSHDVHVLTLMIAELIRLGRLDTAIRIFSKAVEEKFPLDVVSYTV 2
           + N    D H+ T++I  LI+ G+  +AIRIF + + E+  LDVVSY+V
Sbjct: 466 LLNYTGVDAHIHTVIIDGLIKAGKFHSAIRIFRRNLLEENSLDVVSYSV 514


>ref|NP_173127.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806394|sp|Q3EDA9.2|PPR46_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g16830 gi|332191383|gb|AEE29504.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 608

 Score =  102 bits (255), Expect = 2e-20
 Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
 Frame = -3

Query: 499 SKLGRYTDAVDFFFSLLERNIQPDSYTFSSVLSILHVSQRIELLPRLIKEVSKYAASDVV 320
           ++LGR+ +A   F SL +R + PD YTF+S+LS L +S + +L+PR+   +      D+V
Sbjct: 328 TRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSGKFDLVPRITHGIG--TDFDLV 385

Query: 319 VYNCLLSCVSKSRFSSHVVDIFNDMLYRGITPDWYSYIXXXXXXXXXXXLEKAIRVF--V 146
             N L +C SK  ++S+ + + + M Y+    D Y+Y               AI+++  +
Sbjct: 386 TGNLLSNCFSKIGYNSYALKVLSIMSYKDFALDCYTYTVYLSALCRGGAPRAAIKMYKII 445

Query: 145 TNDLSH-DVHVLTLMIAELIRLGRLDTAIRIFSKAVEEKFPLDVVSYTV 2
             +  H D H  + +I  LI LG+ +TA+ +F + + EK+PLDVVSYTV
Sbjct: 446 IKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTV 494