BLASTX nr result

ID: Coptis25_contig00013013 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00013013
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528346.1| Auxin-responsive protein IAA13, putative [Ri...   134   1e-29
gb|ABK94046.1| unknown [Populus trichocarpa]                          130   1e-28
ref|XP_002285483.2| PREDICTED: auxin-responsive protein IAA13-li...   129   2e-28
emb|CBI23724.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002285481.1| PREDICTED: auxin-responsive protein IAA13-li...   129   2e-28

>ref|XP_002528346.1| Auxin-responsive protein IAA13, putative [Ricinus communis]
           gi|223532214|gb|EEF34018.1| Auxin-responsive protein
           IAA13, putative [Ricinus communis]
          Length = 318

 Score =  134 bits (336), Expect = 1e-29
 Identities = 68/101 (67%), Positives = 79/101 (78%)
 Frame = -2

Query: 380 SQVVGWPPIRTYRINSLVNQTKNSSVDEDKMVIETNKNKDVTNKKSDERNNNNGNVQKKG 201
           SQ+VGWPP+RTYRINSLVNQ K S  +EDK V+E +K+KD + K  +    N  N  +KG
Sbjct: 137 SQIVGWPPVRTYRINSLVNQAKASRSEEDKSVVEQDKSKDASKKICNGSKTNATN-NEKG 195

Query: 200 HLGSSLFVKVNMDGVPIGRKVDLNAHACYETLAQTLENMFF 78
           HLG   FVKVNMDG+PIGRKVDLNAHA YETLAQTLE+MFF
Sbjct: 196 HLG---FVKVNMDGIPIGRKVDLNAHASYETLAQTLEDMFF 233


>gb|ABK94046.1| unknown [Populus trichocarpa]
          Length = 303

 Score =  130 bits (327), Expect = 1e-28
 Identities = 66/101 (65%), Positives = 75/101 (74%)
 Frame = -2

Query: 380 SQVVGWPPIRTYRINSLVNQTKNSSVDEDKMVIETNKNKDVTNKKSDERNNNNGNVQKKG 201
           SQVVGWPPIR YR+NSLV+Q K +  +EDK + E +K+K+   KK    N  N    +KG
Sbjct: 122 SQVVGWPPIRAYRMNSLVSQAKAARAEEDKGIGEKDKSKENLKKKICNGNKTNATGNEKG 181

Query: 200 HLGSSLFVKVNMDGVPIGRKVDLNAHACYETLAQTLENMFF 78
           HLG   FVKVNMDGVPIGRKVDLNAHACYETLAQ LE MFF
Sbjct: 182 HLG---FVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFF 219


>ref|XP_002285483.2| PREDICTED: auxin-responsive protein IAA13-like isoform 2 [Vitis
           vinifera]
          Length = 321

 Score =  129 bits (325), Expect = 2e-28
 Identities = 67/102 (65%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
 Frame = -2

Query: 380 SQVVGWPPIRTYRINSLVNQTKNSSVDEDKMVIETNKNKDVTNKKS-DERNNNNGNVQKK 204
           SQVVGWPPIR YR+NSLVNQ K  + ++DK   E +K KD   KK     N NN  V++K
Sbjct: 136 SQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEK 195

Query: 203 GHLGSSLFVKVNMDGVPIGRKVDLNAHACYETLAQTLENMFF 78
           GHLG   FVKVNMDG+PIGRKVDL+AHACY TLAQTLE+MFF
Sbjct: 196 GHLG---FVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFF 234


>emb|CBI23724.3| unnamed protein product [Vitis vinifera]
          Length = 283

 Score =  129 bits (325), Expect = 2e-28
 Identities = 67/102 (65%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
 Frame = -2

Query: 380 SQVVGWPPIRTYRINSLVNQTKNSSVDEDKMVIETNKNKDVTNKKS-DERNNNNGNVQKK 204
           SQVVGWPPIR YR+NSLVNQ K  + ++DK   E +K KD   KK     N NN  V++K
Sbjct: 98  SQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEK 157

Query: 203 GHLGSSLFVKVNMDGVPIGRKVDLNAHACYETLAQTLENMFF 78
           GHLG   FVKVNMDG+PIGRKVDL+AHACY TLAQTLE+MFF
Sbjct: 158 GHLG---FVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFF 196


>ref|XP_002285481.1| PREDICTED: auxin-responsive protein IAA13-like isoform 1 [Vitis
           vinifera]
          Length = 314

 Score =  129 bits (325), Expect = 2e-28
 Identities = 67/102 (65%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
 Frame = -2

Query: 380 SQVVGWPPIRTYRINSLVNQTKNSSVDEDKMVIETNKNKDVTNKKS-DERNNNNGNVQKK 204
           SQVVGWPPIR YR+NSLVNQ K  + ++DK   E +K KD   KK     N NN  V++K
Sbjct: 137 SQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEK 196

Query: 203 GHLGSSLFVKVNMDGVPIGRKVDLNAHACYETLAQTLENMFF 78
           GHLG   FVKVNMDG+PIGRKVDL+AHACY TLAQTLE+MFF
Sbjct: 197 GHLG---FVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFF 235


Top