BLASTX nr result

ID: Coptis25_contig00012972 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012972
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310072.1| predicted protein [Populus trichocarpa] gi|2...   294   1e-77
ref|XP_004148041.1| PREDICTED: thioredoxin-like protein 4A-like ...   293   1e-77
ref|NP_196446.1| mRNA splicing factor, thioredoxin-like U5 snRNP...   292   3e-77
ref|NP_001064903.1| Os10g0486600 [Oryza sativa Japonica Group] g...   292   3e-77
ref|XP_002871315.1| hypothetical protein ARALYDRAFT_908777 [Arab...   292   3e-77

>ref|XP_002310072.1| predicted protein [Populus trichocarpa]
           gi|225432821|ref|XP_002283622.1| PREDICTED:
           thioredoxin-like protein 4A [Vitis vinifera]
           gi|255577696|ref|XP_002529724.1| mitosis protein dim1,
           putative [Ricinus communis]
           gi|356532239|ref|XP_003534681.1| PREDICTED: DIM protein
           [Glycine max] gi|356571707|ref|XP_003554015.1|
           PREDICTED: thioredoxin-like protein 4A-like [Glycine
           max] gi|118484553|gb|ABK94150.1| unknown [Populus
           trichocarpa] gi|222852975|gb|EEE90522.1| predicted
           protein [Populus trichocarpa]
           gi|223530788|gb|EEF32653.1| mitosis protein dim1,
           putative [Ricinus communis] gi|255629203|gb|ACU14946.1|
           unknown [Glycine max] gi|297737123|emb|CBI26324.3|
           unnamed protein product [Vitis vinifera]
          Length = 142

 Score =  294 bits (752), Expect = 1e-77
 Identities = 142/142 (100%), Positives = 142/142 (100%)
 Frame = -2

Query: 594 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 415
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 414 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 235
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 234 RGARKGRGLVIAPKDYSTKYRY 169
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>ref|XP_004148041.1| PREDICTED: thioredoxin-like protein 4A-like [Cucumis sativus]
           gi|317159581|gb|ADV04065.1| mitosis protein YLS8 [Hevea
           brasiliensis]
          Length = 142

 Score =  293 bits (751), Expect = 1e-77
 Identities = 141/142 (99%), Positives = 142/142 (100%)
 Frame = -2

Query: 594 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 415
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 414 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 235
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 234 RGARKGRGLVIAPKDYSTKYRY 169
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>ref|NP_196446.1| mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis
           thaliana] gi|11692866|gb|AAG40036.1|AF324685_1 AT5g08290
           [Arabidopsis thaliana]
           gi|11908020|gb|AAG41439.1|AF326857_1 unknown protein
           [Arabidopsis thaliana]
           gi|12642840|gb|AAK00362.1|AF339680_1 unknown protein
           [Arabidopsis thaliana]
           gi|14030633|gb|AAK52991.1|AF375407_1 AT5g08290/F8L15_20
           [Arabidopsis thaliana] gi|10178271|emb|CAC08329.1|
           putative protein [Arabidopsis thaliana]
           gi|13122294|dbj|BAB32888.1| Dim1 homolog [Arabidopsis
           thaliana] gi|17978897|gb|AAL47418.1| AT5g08290/F8L15_20
           [Arabidopsis thaliana] gi|332003895|gb|AED91278.1| mRNA
           splicing factor, thioredoxin-like U5 snRNP [Arabidopsis
           thaliana]
          Length = 142

 Score =  292 bits (748), Expect = 3e-77
 Identities = 140/142 (98%), Positives = 142/142 (100%)
 Frame = -2

Query: 594 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 415
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 414 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 235
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 234 RGARKGRGLVIAPKDYSTKYRY 169
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>ref|NP_001064903.1| Os10g0486600 [Oryza sativa Japonica Group]
           gi|226498606|ref|NP_001148867.1| LOC100282486 [Zea mays]
           gi|297725467|ref|NP_001175097.1| Os07g0202450 [Oryza
           sativa Japonica Group] gi|242079123|ref|XP_002444330.1|
           hypothetical protein SORBIDRAFT_07g020280 [Sorghum
           bicolor] gi|242092472|ref|XP_002436726.1| hypothetical
           protein SORBIDRAFT_10g007680 [Sorghum bicolor]
           gi|18087886|gb|AAL59040.1|AC087182_23 putative
           thioredoxin-like U5 small ribonucleoprotein particle
           protein [Oryza sativa Japonica Group]
           gi|31432762|gb|AAP54355.1| Thioredoxin-like protein 4A,
           putative, expressed [Oryza sativa Japonica Group]
           gi|33146577|dbj|BAC79773.1| putative dim1p [Oryza sativa
           Japonica Group] gi|50508616|dbj|BAD31005.1| putative
           dim1p [Oryza sativa Japonica Group]
           gi|113639512|dbj|BAF26817.1| Os10g0486600 [Oryza sativa
           Japonica Group] gi|195620258|gb|ACG31959.1| mitosis
           protein dim1 [Zea mays] gi|195622740|gb|ACG33200.1|
           mitosis protein dim1 [Zea mays]
           gi|215686611|dbj|BAG88864.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215768559|dbj|BAH00788.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218199272|gb|EEC81699.1| hypothetical protein
           OsI_25296 [Oryza sativa Indica Group]
           gi|222613039|gb|EEE51171.1| hypothetical protein
           OsJ_31953 [Oryza sativa Japonica Group]
           gi|222636632|gb|EEE66764.1| hypothetical protein
           OsJ_23479 [Oryza sativa Japonica Group]
           gi|241914949|gb|EER88093.1| hypothetical protein
           SORBIDRAFT_10g007680 [Sorghum bicolor]
           gi|241940680|gb|EES13825.1| hypothetical protein
           SORBIDRAFT_07g020280 [Sorghum bicolor]
           gi|255677591|dbj|BAH93825.1| Os07g0202450 [Oryza sativa
           Japonica Group] gi|414870567|tpg|DAA49124.1| TPA:
           mitosis protein dim1 [Zea mays]
          Length = 142

 Score =  292 bits (748), Expect = 3e-77
 Identities = 140/142 (98%), Positives = 142/142 (100%)
 Frame = -2

Query: 594 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 415
           MSYLLPHLHSGWAVDQAILAEEERLV+IRFGHDWDETCMQMDEVLA+VAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60

Query: 414 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 235
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 234 RGARKGRGLVIAPKDYSTKYRY 169
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>ref|XP_002871315.1| hypothetical protein ARALYDRAFT_908777 [Arabidopsis lyrata subsp.
           lyrata] gi|297317152|gb|EFH47574.1| hypothetical protein
           ARALYDRAFT_908777 [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score =  292 bits (748), Expect = 3e-77
 Identities = 140/142 (98%), Positives = 142/142 (100%)
 Frame = -2

Query: 594 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 415
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 414 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 235
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 234 RGARKGRGLVIAPKDYSTKYRY 169
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


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