BLASTX nr result
ID: Coptis25_contig00012957
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00012957
(718 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [... 143 1e-50
ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communi... 127 1e-45
ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-l... 121 1e-43
ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-l... 122 2e-43
ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|2... 123 2e-42
>ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera]
gi|302142303|emb|CBI19506.3| unnamed protein product
[Vitis vinifera]
Length = 448
Score = 143 bits (360), Expect(2) = 1e-50
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +3
Query: 3 VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
VW LS GR LR + FPSIIDA+ALDPGE F+AGSRDGKIYIAALN +SS+S+GMHII
Sbjct: 206 VWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNAVGSSSNSYGMHII 265
Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
G+LS+HS AV+CLA DG LLVSG DG + VWDTKT I R+
Sbjct: 266 GSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKTRNIFRI 309
Score = 83.2 bits (204), Expect(2) = 1e-50
Identities = 45/101 (44%), Positives = 66/101 (65%)
Frame = +1
Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPSRRYGSSLSPPLDKYTNSKDDENDINPIITLPSLCT 537
PV+N+LV+R NP+ + + S+++GS LSPPLDKY NS D+ D I + +
Sbjct: 316 PVSNILVVRRPNDSNPRNS--QTSSKKHGSFLSPPLDKYLNSSDENEDAKVFIGCQTTFS 373
Query: 538 ETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLDS 660
++ D Y + H++ IKE QQQGSSAA+EMEME +++DS
Sbjct: 374 KSVDAS-YRSCHIIIDQIKELQQQGSSAATEMEMERLKIDS 413
>ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communis]
gi|223550902|gb|EEF52388.1| WD-repeat protein, putative
[Ricinus communis]
Length = 452
Score = 127 bits (319), Expect(2) = 1e-45
Identities = 63/103 (61%), Positives = 77/103 (74%)
Frame = +3
Query: 3 VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
VW LS G LR I FPSIID+LALDPGE F+AG RDG IYIAALN +S+S+ S +HII
Sbjct: 203 VWSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDGNIYIAALNADSSSTKSHWLHII 262
Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVR 311
G+LS HS V+CLA + +GNLL++G DG I VWD ++ IVR
Sbjct: 263 GSLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRSHNIVR 305
Score = 82.4 bits (202), Expect(2) = 1e-45
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +1
Query: 358 PVNNVLVIRLSLFQNPQ-TAVNRQPSRRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
PVNN+ +++ + NP+ +++ + SRR+GSSL PPLDKY NS D ++ L C
Sbjct: 313 PVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSIGSTAVVRLQDTC 372
Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLDSLRW 669
P + Y + V++ IKE QQQGS+AA+EME+E ++LD ++
Sbjct: 373 -NNPLDVSYVSYQVIANQIKELQQQGSAAAAEMEVERLKLDCAQY 416
>ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]
Length = 449
Score = 121 bits (304), Expect(2) = 1e-43
Identities = 59/104 (56%), Positives = 74/104 (71%)
Frame = +3
Query: 3 VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
VW LS G LR I FPSII+ +ALDP E F+AGS DGKI+IAALN ES +++++GMHII
Sbjct: 201 VWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESIATNNYGMHII 260
Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
+ S HS V+CLA NLL+SG DG + VW+ +T IVRM
Sbjct: 261 SSFSNHSNQVTCLAYGSSENLLISGSEDGMVRVWNARTRNIVRM 304
Score = 81.3 bits (199), Expect(2) = 1e-43
Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +1
Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
PVNN+LV+R + + N Q S R+ GS+L PPL+KY NS DD++D+ +I+L
Sbjct: 311 PVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDSDMKTMISLGGGR 370
Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
Y +SHV+S +IKE Q QGS+AASEMEME ++ D
Sbjct: 371 KSVDPS--YISSHVISNYIKELQHQGSAAASEMEMEKLKHD 409
>ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]
Length = 449
Score = 122 bits (307), Expect(2) = 2e-43
Identities = 59/104 (56%), Positives = 75/104 (72%)
Frame = +3
Query: 3 VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
VW LS G LR I FPSII+ +ALDP E F+AGS DGKI+IAALN ES +++++GMHII
Sbjct: 201 VWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNNYGMHII 260
Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
G+ S HS V+CLA NLL++G DG + VW+ +T IVRM
Sbjct: 261 GSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRM 304
Score = 79.7 bits (195), Expect(2) = 2e-43
Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Frame = +1
Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
PVNN+LV+R + + N Q S R+ GS+L PPL+KY NS DD+ D+ +I+L
Sbjct: 311 PVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDLDMKTMISLGGGR 370
Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
Y +SHV+S +IKE Q QGS+AASEMEME ++ D
Sbjct: 371 RSVDPS--YLSSHVISNYIKELQHQGSAAASEMEMEKLKHD 409
>ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1|
predicted protein [Populus trichocarpa]
Length = 446
Score = 123 bits (308), Expect(2) = 2e-42
Identities = 62/104 (59%), Positives = 76/104 (73%)
Frame = +3
Query: 3 VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
VW LS G LR I FPSIID++ LDPGE F+AG RDGKI+IAAL +S+S S +HII
Sbjct: 202 VWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGKIHIAALGADSSSIKSHWLHII 261
Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
G+LS HS V+CLA + +GN+L+SG DG I VWD KT IVR+
Sbjct: 262 GSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTHNIVRV 305
Score = 75.5 bits (184), Expect(2) = 2e-42
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
PVNN+ V+ + NP++ N Q S RR+G SL PPL KY N+ D E I+ + L + C
Sbjct: 312 PVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMD-EKVISAAVNLQATC 370
Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
D +S V++ IKE QQQGS+AA+EME+E ++LD
Sbjct: 371 NNPLDASCI-SSQVINCQIKELQQQGSAAAAEMEVEKLKLD 410