BLASTX nr result

ID: Coptis25_contig00012957 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012957
         (718 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [...   143   1e-50
ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communi...   127   1e-45
ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-l...   121   1e-43
ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-l...   122   2e-43
ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-42

>ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera]
           gi|302142303|emb|CBI19506.3| unnamed protein product
           [Vitis vinifera]
          Length = 448

 Score =  143 bits (360), Expect(2) = 1e-50
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +3

Query: 3   VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
           VW LS GR LR + FPSIIDA+ALDPGE  F+AGSRDGKIYIAALN   +SS+S+GMHII
Sbjct: 206 VWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNAVGSSSNSYGMHII 265

Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
           G+LS+HS AV+CLA   DG LLVSG  DG + VWDTKT  I R+
Sbjct: 266 GSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKTRNIFRI 309



 Score = 83.2 bits (204), Expect(2) = 1e-50
 Identities = 45/101 (44%), Positives = 66/101 (65%)
 Frame = +1

Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPSRRYGSSLSPPLDKYTNSKDDENDINPIITLPSLCT 537
           PV+N+LV+R     NP+ +  +  S+++GS LSPPLDKY NS D+  D    I   +  +
Sbjct: 316 PVSNILVVRRPNDSNPRNS--QTSSKKHGSFLSPPLDKYLNSSDENEDAKVFIGCQTTFS 373

Query: 538 ETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLDS 660
           ++ D   Y + H++   IKE QQQGSSAA+EMEME +++DS
Sbjct: 374 KSVDAS-YRSCHIIIDQIKELQQQGSSAATEMEMERLKIDS 413


>ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communis]
           gi|223550902|gb|EEF52388.1| WD-repeat protein, putative
           [Ricinus communis]
          Length = 452

 Score =  127 bits (319), Expect(2) = 1e-45
 Identities = 63/103 (61%), Positives = 77/103 (74%)
 Frame = +3

Query: 3   VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
           VW LS G  LR I FPSIID+LALDPGE  F+AG RDG IYIAALN +S+S+ S  +HII
Sbjct: 203 VWSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDGNIYIAALNADSSSTKSHWLHII 262

Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVR 311
           G+LS HS  V+CLA + +GNLL++G  DG I VWD ++  IVR
Sbjct: 263 GSLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRSHNIVR 305



 Score = 82.4 bits (202), Expect(2) = 1e-45
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
 Frame = +1

Query: 358 PVNNVLVIRLSLFQNPQ-TAVNRQPSRRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
           PVNN+ +++   + NP+ +++ +  SRR+GSSL PPLDKY NS D       ++ L   C
Sbjct: 313 PVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSIGSTAVVRLQDTC 372

Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLDSLRW 669
              P  + Y +  V++  IKE QQQGS+AA+EME+E ++LD  ++
Sbjct: 373 -NNPLDVSYVSYQVIANQIKELQQQGSAAAAEMEVERLKLDCAQY 416


>ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]
          Length = 449

 Score =  121 bits (304), Expect(2) = 1e-43
 Identities = 59/104 (56%), Positives = 74/104 (71%)
 Frame = +3

Query: 3   VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
           VW LS G  LR I FPSII+ +ALDP E  F+AGS DGKI+IAALN ES +++++GMHII
Sbjct: 201 VWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESIATNNYGMHII 260

Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
            + S HS  V+CLA     NLL+SG  DG + VW+ +T  IVRM
Sbjct: 261 SSFSNHSNQVTCLAYGSSENLLISGSEDGMVRVWNARTRNIVRM 304



 Score = 81.3 bits (199), Expect(2) = 1e-43
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
 Frame = +1

Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
           PVNN+LV+R     +   + N Q S R+ GS+L PPL+KY NS DD++D+  +I+L    
Sbjct: 311 PVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDSDMKTMISLGGGR 370

Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
                   Y +SHV+S +IKE Q QGS+AASEMEME ++ D
Sbjct: 371 KSVDPS--YISSHVISNYIKELQHQGSAAASEMEMEKLKHD 409


>ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]
          Length = 449

 Score =  122 bits (307), Expect(2) = 2e-43
 Identities = 59/104 (56%), Positives = 75/104 (72%)
 Frame = +3

Query: 3   VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
           VW LS G  LR I FPSII+ +ALDP E  F+AGS DGKI+IAALN ES +++++GMHII
Sbjct: 201 VWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDGKIFIAALNTESITTNNYGMHII 260

Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
           G+ S HS  V+CLA     NLL++G  DG + VW+ +T  IVRM
Sbjct: 261 GSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNARTRNIVRM 304



 Score = 79.7 bits (195), Expect(2) = 2e-43
 Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
 Frame = +1

Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
           PVNN+LV+R     +   + N Q S R+ GS+L PPL+KY NS DD+ D+  +I+L    
Sbjct: 311 PVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDLDMKTMISLGGGR 370

Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
                   Y +SHV+S +IKE Q QGS+AASEMEME ++ D
Sbjct: 371 RSVDPS--YLSSHVISNYIKELQHQGSAAASEMEMEKLKHD 409


>ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1|
           predicted protein [Populus trichocarpa]
          Length = 446

 Score =  123 bits (308), Expect(2) = 2e-42
 Identities = 62/104 (59%), Positives = 76/104 (73%)
 Frame = +3

Query: 3   VWGLSGGRFLRTIEFPSIIDALALDPGEKSFFAGSRDGKIYIAALNGESTSSSSFGMHII 182
           VW LS G  LR I FPSIID++ LDPGE  F+AG RDGKI+IAAL  +S+S  S  +HII
Sbjct: 202 VWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGKIHIAALGADSSSIKSHWLHII 261

Query: 183 GALSEHSTAVSCLALNMDGNLLVSGLVDGTICVWDTKTLQIVRM 314
           G+LS HS  V+CLA + +GN+L+SG  DG I VWD KT  IVR+
Sbjct: 262 GSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTHNIVRV 305



 Score = 75.5 bits (184), Expect(2) = 2e-42
 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +1

Query: 358 PVNNVLVIRLSLFQNPQTAVNRQPS-RRYGSSLSPPLDKYTNSKDDENDINPIITLPSLC 534
           PVNN+ V+    + NP++  N Q S RR+G SL PPL KY N+ D E  I+  + L + C
Sbjct: 312 PVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMD-EKVISAAVNLQATC 370

Query: 535 TETPDGLLYYTSHVMSTHIKEFQQQGSSAASEMEME*VRLD 657
               D     +S V++  IKE QQQGS+AA+EME+E ++LD
Sbjct: 371 NNPLDASCI-SSQVINCQIKELQQQGSAAAAEMEVEKLKLD 410


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