BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012952
         (1021 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   130   7e-28
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   128   3e-27
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   127   6e-27
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   127   6e-27
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...   126   1e-26

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  130 bits (326), Expect = 7e-28
 Identities = 98/359 (27%), Positives = 159/359 (44%), Gaps = 29/359 (8%)
 Frame = -1

Query: 1000 GDGTSINLSTDSWIPGNEGVIAPITLTNSITPLF-------VSDLIDSTTRKWRSNIIYH 842
            G+G +IN+ TD WI       A     + +   +       V DL+    R W  N++  
Sbjct: 927  GNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSL 986

Query: 841  CWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHALHST-------------N 701
             +P++  + I+++        D   W  S +G Y+VKSGY  +                +
Sbjct: 987  LFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPS 1046

Query: 700  TTPLFDWRIIWKLKCPPRVKVFMWKLSRDALKSSSNLFRFGLNINPDCIFCNNHPDTAQH 521
              P+F    IWKL  PP++  F+W+   + L  +SNL    L     C+ C +H +T  H
Sbjct: 1047 LDPIFQQ--IWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNH 1104

Query: 520  LFHECPFTQTVWQTSPLPQIGYVPFTETTQIWITKIQQLLRNTHGTIPFAIELFAI---L 350
            L  +CPF +  W  SPLP     P  E  +     +  +L + H + P   +  A+   +
Sbjct: 1105 LLFKCPFARLTWAISPLPA---PPGGEWAESLFRNMHHVL-SVHKSQPEESDHHALIPWI 1160

Query: 349  CWSIWNSRNERLFEQKRVT-PQGTLRAS--LAFWRSTKEAQNLLLKPKRTKQLVHPC--W 185
             W +W +RN+ +F+ +  T PQ  L+A+  +  W + KE Q     P+ T      C  W
Sbjct: 1161 LWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQ-----PQVTSSTRDRCVKW 1215

Query: 184  KPNAPPHITLNTDGACHGNPGPLGLGCVLRTSDGTFVAAAVVFVPISTSFI-AEALAMR 11
            +P +   +  NTDGA   + G  G+G VLR   G  +   +  +P   S +  E  A+R
Sbjct: 1216 QPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALR 1274


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  128 bits (321), Expect = 3e-27
 Identities = 97/347 (27%), Positives = 160/347 (46%), Gaps = 14/347 (4%)
 Frame = -1

Query: 1000 GDGTSINLSTDSWIPGNE--GVIAPITLTNSITPLFVSDLIDSTTRKWRSNIIYHCWPED 827
            GDG    +  D W+P  E   + A   ++    P  V +LI +   +W   ++   +   
Sbjct: 936  GDGRDTTIWGDPWVPSLERYSIAATEGVSEDDGPQKVCELISND--RWNVELLNTLFQPW 993

Query: 826  IAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYH--ALHSTNTTP-------LFDWRI 674
             +  I  IP++L   PD+ +W +S NG++TV+S Y+   L    T P       L  W+ 
Sbjct: 994  ESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQK 1053

Query: 673  IWKLKCPPRVKVFMWKLSRDALKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHECPFTQ 494
            IWK K PP+VK+F WK   + L   +N+ + G+NI+  C  C    +T +HL   C  + 
Sbjct: 1054 IWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESS 1113

Query: 493  TVWQTSPLP-QIGYVPFTETTQIWITKIQQLLRNTHGTIPFAIELFAILCWSIWNSRNER 317
              W  SPL    G +    + +IW+  +    ++T         LF ++CW+IW  RN+ 
Sbjct: 1114 RAWYISPLRIHTGNIE-AGSFRIWVESLLDTHKDTEWW-----ALFWMICWNIWLGRNKW 1167

Query: 316  LFEQKRVTPQGTL-RASLAFWRSTKEAQNLLLKPKRTKQLVHPCWKPNAPPHITLNTDGA 140
            +FE+K++  Q  + RA        +E  +    P  T       W       + LN D A
Sbjct: 1168 VFEKKKLAFQEVVERAVRGVMEFEEECAH--TSPVETLNTHENGWSVPPVGMVKLNVDAA 1225

Query: 139  CHGNPGPLGLGCVLRTSDG-TFVAAAVVFVPISTSFIAEALAMRLGL 2
               + G +G+G V+R ++G   +A       +    +AEA ++R GL
Sbjct: 1226 VFKHVG-IGMGGVVRDAEGDVLLATCCGGWAMEDPAMAEACSLRYGL 1271


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  127 bits (318), Expect = 6e-27
 Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 22/355 (6%)
 Frame = -1

Query: 1000 GDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVSDLIDSTTRKWRSNIIYHCWPEDIA 821
            GDG +I + +D+WIPG    +   TL+   T   VS L++   R W  ++I   +P DIA
Sbjct: 942  GDGKTIKIFSDNWIPGFRPQLVT-TLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIA 1000

Query: 820  KQIISIPLSLSANPDERIWTLSVNGKYTVKSGYH----------------ALHSTNTTPL 689
            K+I+ IP+S   + D   W     G Y+V+S Y+                 + S      
Sbjct: 1001 KEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQ 1060

Query: 688  FDWRIIWKLKCPPRVKVFMWKLSRDALKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHE 509
             DW+ +WK+  P ++K+ +W+ + + L +   L R  +     C+FC N  DT +H+F  
Sbjct: 1061 KDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLF 1119

Query: 508  CPFTQTVWQT---SPLPQIGYVPFTETTQIWITKIQQLLRNTHGTIPFAIELFAILCWSI 338
            CPF   +W+        ++G   F+ T + WI     L R +      A  L A+  W I
Sbjct: 1120 CPFAAQIWEEIKGKCAVKLGRNGFS-TMRQWI--FDFLKRGS----SHANTLLAVTFWHI 1172

Query: 337  WNSRNERLFEQKRVTPQGTLRASLAFWRSTKEAQNLLLKPKR--TKQLVHPCWKPNAPPH 164
            W +RN        V PQ  +   L++     +     +  +R    Q + P W+P     
Sbjct: 1173 WEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGNTQAI-PRWQPPPASV 1231

Query: 163  ITLNTDGACHGNPGPLGLGCVLRTSDG-TFVAAAVVFVPISTSFIAEALAMRLGL 2
              +N+D A   +   +G+G ++R + G   VA + +   +    +AEALA+R  L
Sbjct: 1232 WMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRAL 1286


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  127 bits (318), Expect = 6e-27
 Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 22/355 (6%)
 Frame = -1

Query: 1000 GDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVSDLIDSTTRKWRSNIIYHCWPEDIA 821
            GDG +I + +D+WIPG    +   TL+   T   VS L++   R W  ++I   +P DIA
Sbjct: 899  GDGKTIKIFSDNWIPGFRPQLVT-TLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIA 957

Query: 820  KQIISIPLSLSANPDERIWTLSVNGKYTVKSGYH----------------ALHSTNTTPL 689
            K+I+ IP+S   + D   W     G Y+V+S Y+                 + S      
Sbjct: 958  KEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQ 1017

Query: 688  FDWRIIWKLKCPPRVKVFMWKLSRDALKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHE 509
             DW+ +WK+  P ++K+ +W+ + + L +   L R  +     C+FC N  DT +H+F  
Sbjct: 1018 KDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLF 1076

Query: 508  CPFTQTVWQT---SPLPQIGYVPFTETTQIWITKIQQLLRNTHGTIPFAIELFAILCWSI 338
            CPF   +W+        ++G   F+ T + WI     L R +      A  L A+  W I
Sbjct: 1077 CPFAAQIWEEIKGKCAVKLGRNGFS-TMRQWI--FDFLKRGS----SHANTLLAVTFWHI 1129

Query: 337  WNSRNERLFEQKRVTPQGTLRASLAFWRSTKEAQNLLLKPKR--TKQLVHPCWKPNAPPH 164
            W +RN        V PQ  +   L++     +     +  +R    Q + P W+P     
Sbjct: 1130 WEARNNTKNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGNTQAI-PRWQPPPASV 1188

Query: 163  ITLNTDGACHGNPGPLGLGCVLRTSDG-TFVAAAVVFVPISTSFIAEALAMRLGL 2
              +N+D A   +   +G+G ++R + G   VA + +   +    +AEALA+R  L
Sbjct: 1189 WMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRAL 1243


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score =  126 bits (316), Expect = 1e-26
 Identities = 91/337 (27%), Positives = 146/337 (43%), Gaps = 4/337 (1%)
 Frame = -1

Query: 1000 GDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVSDLIDSTTRKWRSNIIYHCWPEDIA 821
            GDG S N   D WI  N  + +  T +   T + V D I+ T+  W  N +      DI 
Sbjct: 358  GDGRSTNFWLDKWISNNTSLFSSSTQSYVDTTISVRDAIN-TSGVWDLNFLMDNLHVDIV 416

Query: 820  KQIISIPLSLSAN-PDERIWTLSVNGKYTVKSGYHALHSTNTTPLFDWRIIWKLKCPPRV 644
             QI+++P     + PD   W  +   K+TV+S Y+           DW+ +W  K P R+
Sbjct: 417  NQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGDWKTLWNWKGPHRI 476

Query: 643  KVFMWKLSRDALKSSSNLFRFGLNINPDCIFCNNHPDTAQHLFHECPFTQTVWQTSPLPQ 464
            + F+W  +   + ++    ++G+ I+P C  C    +T  H+  +C  +  VW    L  
Sbjct: 477  QTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLR--LIP 534

Query: 463  IGYVP--FTETTQIWITKIQQLLRNTHGTIPFAIEL-FAILCWSIWNSRNERLFEQKRVT 293
              Y+   F+   + W+     L +   G  P   +  F   CW +WN RN+ +FE     
Sbjct: 535  HNYITNFFSFDCREWV--FNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIGFQR 592

Query: 292  PQGTLRASLAFWRSTKEAQNLLLKPKRTKQLVHPCWKPNAPPHITLNTDGACHGNPGPLG 113
            P         F R  ++   L+ K    K+ ++  W       + LN DGA  G+    G
Sbjct: 593  PSNPTLVIQKFTREIEDNTKLVHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAG 652

Query: 112  LGCVLRTSDGTFVAAAVVFVPISTSFIAEALAMRLGL 2
             G +LR SDG ++      + +  +F AE   M LGL
Sbjct: 653  CGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGL 689