BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012927
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   183   1e-44
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   183   1e-44
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...   166   2e-39
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...   160   1e-37
sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-c...   150   8e-35

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  183 bits (465), Expect = 1e-44
 Identities = 93/140 (66%), Positives = 117/140 (83%)
 Frame = -1

Query: 420 SSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 241
           S+ LP+ Q S DAD IS +L+QHHNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 240 LAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMDQSNNVHVLSSKTFG 61
           L+FF+WAK++  + ++HD++SYNL+IDIL KVRQFDVAWQ IIEMDQ  N    +S TF 
Sbjct: 101 LSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ--NSLEPTSTTFR 156

Query: 60  VLIRRLIAAGFTRQAIRAFD 1
           +LIRR ++AG TRQA+RAFD
Sbjct: 157 ILIRRSVSAGLTRQAVRAFD 176


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  183 bits (465), Expect = 1e-44
 Identities = 93/140 (66%), Positives = 117/140 (83%)
 Frame = -1

Query: 420 SSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 241
           S+ LP+ Q S DAD IS +L+QHHNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 240 LAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMDQSNNVHVLSSKTFG 61
           L+FF+WAK++  + ++HD++SYNL+IDIL KVRQFDVAWQ IIEMDQ  N    +S TF 
Sbjct: 101 LSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ--NSLEPTSTTFR 156

Query: 60  VLIRRLIAAGFTRQAIRAFD 1
           +LIRR ++AG TRQA+RAFD
Sbjct: 157 ILIRRSVSAGLTRQAVRAFD 176


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score =  166 bits (420), Expect = 2e-39
 Identities = 88/141 (62%), Positives = 115/141 (81%)
 Frame = -1

Query: 423 SSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKI 244
           S+ +LP+ + SNDA+ +S +L+ HHNPFH MESSLQL+GITLSS+L+HQ+LLRL+H SKI
Sbjct: 26  STFSLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKI 85

Query: 243 ALAFFIWAKNENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMDQSNNVHVLSSKTF 64
           AL+FF ++ +   S  + +  +YNL+IDIL KVRQFDV+WQLII+MDQ+N     +S TF
Sbjct: 86  ALSFFHYSLSLPSS--SVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQP--NSHTF 141

Query: 63  GVLIRRLIAAGFTRQAIRAFD 1
            +LIRRLI+AGFTRQAIRAFD
Sbjct: 142 LILIRRLISAGFTRQAIRAFD 162


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  160 bits (405), Expect = 1e-37
 Identities = 90/161 (55%), Positives = 111/161 (68%), Gaps = 17/161 (10%)
 Frame = -1

Query: 432 NPSSSSALPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHV 253
           +P + + LPT Q SNDAD +S +L+ HHNPFH MESSLQL GI+L+ +L+HQ+LLRL+H 
Sbjct: 41  SPRNDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHN 100

Query: 252 SKIALAFFIWA------KNENP-----------SIYTHDIMSYNLMIDILGKVRQFDVAW 124
           SKIAL+ F  +        +NP              T   ++YNLMIDIL KVRQFDV W
Sbjct: 101 SKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCW 160

Query: 123 QLIIEMDQSNNVHVLSSKTFGVLIRRLIAAGFTRQAIRAFD 1
           QLI+EMDQ N     +S+TF VLIRRL+AAG TRQAIRAFD
Sbjct: 161 QLIVEMDQRNVKP--TSETFFVLIRRLVAAGLTRQAIRAFD 199


>sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
           gi|110738270|dbj|BAF01064.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 509

 Score =  150 bits (380), Expect = 8e-35
 Identities = 82/138 (59%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
 Frame = -1

Query: 411 LPTYQASNDADTISNLLIQHHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIALAF 232
           LP  + S+DA+ IS +LI +HNPFH MESSLQLNGI+L+ NL+HQ+LLRL+H SKIAL+F
Sbjct: 32  LPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSF 91

Query: 231 FIWAKN-ENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIEMDQSNNVHVLSSKTFGVL 55
           F + ++  +PS       S+NL+IDILG+VRQFDV  QLI+EMDQ+      S +TF +L
Sbjct: 92  FQYLRSLPSPSTTP---TSFNLIIDILGRVRQFDVVRQLIVEMDQT------SPETFLIL 142

Query: 54  IRRLIAAGFTRQAIRAFD 1
           ++RLIAAG TRQA+RAFD
Sbjct: 143 VKRLIAAGLTRQAVRAFD 160