BLASTX nr result
ID: Coptis25_contig00012874
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00012874
(914 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera... 121 5e-27
ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)... 117 3e-26
emb|CBJ20686.1| hypothetical protein [Beta vulgaris subsp. marit... 103 2e-23
dbj|BAD66821.1| orf670 [Beta vulgaris subsp. vulgaris] 101 1e-22
ref|NP_064021.1| orf670 gene product (mitochondrion) [Beta vulga... 101 1e-22
>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
polymerase. This is a family of single chain RNA
polymerases; pfam00940 [Vitis vinifera]
gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
[Vitis vinifera]
Length = 975
Score = 121 bits (303), Expect(2) = 5e-27
Identities = 74/170 (43%), Positives = 96/170 (56%), Gaps = 11/170 (6%)
Frame = +1
Query: 259 RHQASLFKSGRCNKPFSSTTKDFK-------VKKSGKDRKRSKLVMMYPFGSGLVQFMEE 417
R QA L K G ++ ST + VK + K+ Y FG+ LV+F+
Sbjct: 213 RSQAKLLK-GYTSEERPSTKHEINSDDTSSNVKAEENEMANDKMQNNYAFGAFLVEFLVN 271
Query: 418 RKLISLMTDLS--GTVRVKKKKGSYFLPSHLYAVCNFDISLLPIKLNLPMVCKPRDWTRA 591
RK ISL +LS V K G Y++P LYA+CNFDISLLPIKLNLPM+CKP DW +
Sbjct: 272 RKWISLSNELSFHEQYSVTMKNGKYYIPRQLYAICNFDISLLPIKLNLPMICKPLDW-KP 330
Query: 592 CPPD*NPRYLSDPSGGYLSGPTGGLYD--RYRLLSSGDINHFYIDIGREK 735
D P LSD GGYLS P+G Y RYR++++ D++HF+I K
Sbjct: 331 IRDDIIPSSLSDMRGGYLSIPSGDFYQQKRYRVMTTRDLSHFHIKFDEGK 380
Score = 26.6 bits (57), Expect(2) = 5e-27
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 749 CLVMNKLQGQAFQIN 793
CL MNKLQ Q+F+I+
Sbjct: 385 CLTMNKLQAQSFEIH 399
>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
(mitochondrion) [Phoenix dactylifera]
Length = 875
Score = 117 bits (293), Expect(2) = 3e-26
Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Frame = +1
Query: 379 YPFGSGLVQFMEERKLISLMTDLSGT-VRVKKKKGSYFLPSHLYAVCNFDISLLPIKLNL 555
Y G LV F+ ER LI L +++S T V V KKG ++P + YA+CNFD SLLPIKLNL
Sbjct: 144 YAIGVHLVNFLVERGLIHLSSEVSFTEVPVVNKKGKGYIPINCYAMCNFDFSLLPIKLNL 203
Query: 556 PMVCKPRDWTRACPPD*NPRYLSDPSGGYLSGPTGGLYDRYRLLSSGDINHFYIDI 723
PMVC P W + +P L+D SGGYLSGPT +Y+R+R+L+S D++HFY+ +
Sbjct: 204 PMVCNPLPWNST---EESPTMLTDLSGGYLSGPTLDIYNRFRILTSRDLSHFYVTL 256
Score = 28.1 bits (61), Expect(2) = 3e-26
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 743 RNCLVMNKLQGQAFQINNYWLQ 808
R C ++N LQ Q F+INN L+
Sbjct: 263 RMCTILNSLQSQVFEINNKVLE 284
>emb|CBJ20686.1| hypothetical protein [Beta vulgaris subsp. maritima]
Length = 670
Score = 103 bits (258), Expect(2) = 2e-23
Identities = 63/139 (45%), Positives = 81/139 (58%), Gaps = 8/139 (5%)
Frame = +1
Query: 352 RKRSKLVMMYPFGSGLVQFMEERKLISLMTDLSGTVR------VKKKKGSYFLPSHLYAV 513
+K S + YPFG+ L++FM ER LI L +V+ +KKKKGS + S LY
Sbjct: 263 KKESNNSISYPFGTALIEFMVERGLIDLKVRDVLSVQGGNKPEIKKKKGSRYRSSALYVE 322
Query: 514 CNFDISLLPIKLNLPMVCKPRDWTRACPPD*NPRYL--SDPSGGYLSGPTGGLYDRYRLL 687
C FD SLLP+KL LPMVC PRDW+ N YL S SGGYL+ L D LL
Sbjct: 323 CKFDTSLLPMKLQLPMVCMPRDWSYDVSESQNSEYLNISSLSGGYLN---DHLNDGNSLL 379
Query: 688 SSGDINHFYIDIGREKNYE 744
S+GDI++F++ G+ K E
Sbjct: 380 STGDISNFFLYFGKSKKNE 398
Score = 31.6 bits (70), Expect(2) = 2e-23
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 749 CLVMNKLQGQAFQINNYWLQCLK*N 823
C VMNKLQ Q F+IN +L LK N
Sbjct: 407 CTVMNKLQNQGFKINEGFLNFLKRN 431
>dbj|BAD66821.1| orf670 [Beta vulgaris subsp. vulgaris]
Length = 670
Score = 101 bits (252), Expect(2) = 1e-22
Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Frame = +1
Query: 352 RKRSKLVMMYPFGSGLVQFMEERKLISLMTDLSGTVR------VKKKKGSYFLPSHLYAV 513
+K S + YPFG+ L++FM ER LI L +V+ +KKKKG + S LY
Sbjct: 263 KKESNNSISYPFGTALIEFMVERGLIDLKVRDVLSVQGGNKPEIKKKKGYRYRSSALYVE 322
Query: 514 CNFDISLLPIKLNLPMVCKPRDWTRACPPD*NPRYL--SDPSGGYLSGPTGGLYDRYRLL 687
C FD SLLP+KL LPMVC PRDW+ N YL S SGGYL+ L D LL
Sbjct: 323 CKFDTSLLPMKLQLPMVCMPRDWSYDVSESQNSEYLNISSLSGGYLN---DHLNDGNSLL 379
Query: 688 SSGDINHFYIDIGREKNYE 744
S+GDI++F++ G+ K E
Sbjct: 380 STGDISNFFLYFGKSKKNE 398
Score = 31.6 bits (70), Expect(2) = 1e-22
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 749 CLVMNKLQGQAFQINNYWLQCLK*N 823
C VMNKLQ Q F+IN +L LK N
Sbjct: 407 CTVMNKLQNQGFKINEGFLNFLKRN 431
>ref|NP_064021.1| orf670 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|9838496|ref|NP_064108.1| orf670 gene product
(mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435078|ref|YP_004222296.1| hypothetical protein
BevumaM_p058 [Beta vulgaris subsp. maritima]
gi|323435132|ref|YP_004222350.1| hypothetical protein
BevumaM_p117 [Beta vulgaris subsp. maritima]
gi|346683169|ref|YP_004842101.1| hypothetical protein
BemaM_p054 [Beta macrocarpa]
gi|346683223|ref|YP_004842155.1| hypothetical protein
BemaM_p111 [Beta macrocarpa] gi|9049322|dbj|BAA99332.1|
orf670 [Beta vulgaris subsp. vulgaris]
gi|9087358|dbj|BAA99502.1| orf670 [Beta vulgaris subsp.
vulgaris] gi|317905583|emb|CBJ13995.1| hypothetical
protein [Beta vulgaris subsp. maritima]
gi|317905631|emb|CBJ14031.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|319439811|emb|CBJ17522.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|319439865|emb|CBJ17570.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|345500087|emb|CBX24903.1|
hypothetical protein [Beta macrocarpa]
gi|345500141|emb|CBX24960.1| hypothetical protein [Beta
macrocarpa] gi|384977890|emb|CBL54112.1| hypothetical
protein (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 670
Score = 101 bits (252), Expect(2) = 1e-22
Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Frame = +1
Query: 352 RKRSKLVMMYPFGSGLVQFMEERKLISLMTDLSGTVR------VKKKKGSYFLPSHLYAV 513
+K S + YPFG+ L++FM ER LI L +V+ +KKKKG + S LY
Sbjct: 263 KKESNNSISYPFGTALIEFMVERGLIDLKVRDVLSVQGGNKPEIKKKKGYRYRSSALYVE 322
Query: 514 CNFDISLLPIKLNLPMVCKPRDWTRACPPD*NPRYL--SDPSGGYLSGPTGGLYDRYRLL 687
C FD SLLP+KL LPMVC PRDW+ N YL S SGGYL+ L D LL
Sbjct: 323 CKFDTSLLPMKLQLPMVCMPRDWSYDVSESQNSEYLNISSLSGGYLN---DHLNDGNSLL 379
Query: 688 SSGDINHFYIDIGREKNYE 744
S+GDI++F++ G+ K E
Sbjct: 380 STGDISNFFLYFGKSKKNE 398
Score = 31.6 bits (70), Expect(2) = 1e-22
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 749 CLVMNKLQGQAFQINNYWLQCLK*N 823
C VMNKLQ Q F+IN +L LK N
Sbjct: 407 CTVMNKLQNQGFKINEGFLNFLKRN 431