BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012869
         (1981 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    91   9e-16
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    90   3e-15
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    89   3e-15
gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               83   3e-13
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    82   5e-13

>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score = 91.3 bits (225), Expect = 9e-16
 Identities = 48/141 (34%), Positives = 76/141 (53%)
 Frame = +3

Query: 1548 SMTIHAWNYRGIGTTTVVQQLMDLIGKFDVDIVCLFETKASKDGIEKLGKKLKFSRHFAV 1727
            +M+  AWN RG+G T  VQ L  LI K    +V L ET+ S + + +L +KL F     V
Sbjct: 635  AMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGV 694

Query: 1728 PAKGLSGGLAILSKEGVELEILGSSRNQVTGKILNYFHKDPWFFSFVYGEPVAHNRNKVW 1907
             ++G SGGLA+   E V +++   ++  +   +     +  W  +FVYGEP   NR+++W
Sbjct: 695  SSEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMW 754

Query: 1908 TELKEVAPFVPGLWCLFGDFN 1970
            + L+ +       W + GDFN
Sbjct: 755  SLLRTIRQSSALPWMVIGDFN 775


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score = 89.7 bits (221), Expect = 3e-15
 Identities = 51/146 (34%), Positives = 74/146 (50%)
 Frame = +3

Query: 1533 TAALVSMTIHAWNYRGIGTTTVVQQLMDLIGKFDVDIVCLFETKASKDGIEKLGKKLKFS 1712
            + A  +M   +WN RGIG  T VQ+L  L+ +     V L ET+   D I++L  +L   
Sbjct: 456  SGAAGAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLR 515

Query: 1713 RHFAVPAKGLSGGLAILSKEGVELEILGSSRNQVTGKILNYFHKDPWFFSFVYGEPVAHN 1892
                V + G+SGGLA+   E V +EIL  +   +   I    +   W  +FVYGEP   N
Sbjct: 516  GFAGVSSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVEN 575

Query: 1893 RNKVWTELKEVAPFVPGLWCLFGDFN 1970
            R+K+W+ L  +       W + GDFN
Sbjct: 576  RHKMWSLLNSIKQSSNLSWLVIGDFN 601


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 50/141 (35%), Positives = 72/141 (51%)
 Frame = +3

Query: 1548 SMTIHAWNYRGIGTTTVVQQLMDLIGKFDVDIVCLFETKASKDGIEKLGKKLKFSRHFAV 1727
            +M   +WN RGIG  T VQ+L  L+ +     V L ET+   D I++L  +L       V
Sbjct: 433  AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGV 492

Query: 1728 PAKGLSGGLAILSKEGVELEILGSSRNQVTGKILNYFHKDPWFFSFVYGEPVAHNRNKVW 1907
             + G+SGGLA+   E V +EIL  +   +   I    +   W  +FVYGEP   NR+K+W
Sbjct: 493  SSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHKMW 552

Query: 1908 TELKEVAPFVPGLWCLFGDFN 1970
            + L  +       W + GDFN
Sbjct: 553  SLLNSIKQSSNLSWLVIGDFN 573


>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
 Frame = +3

Query: 1566 WNYRGIGTTTVVQQLMDLIGKFDVDIVCLFETKASKDGIEKLGKKLKFSRHFAVPAKGLS 1745
            WN +G+G    V++L ++  K+  D++CL ETK   D +     +L FS    VP+ GLS
Sbjct: 59   WNCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFSNFVMVPSMGLS 118

Query: 1746 GGLAILSKEGVELEILGSSRNQVTGKILNYFHKDPWFFSFVYGEPVAHNRNKVWTELKEV 1925
            GGL +L K  V + +  +S N V   + +  ++  +  SFVYG P   +RN +W  L+ +
Sbjct: 119  GGLVVLWKPSVHISVSFNSPNLVDCYVQS--NEVGFNLSFVYGHPNPSHRNNLWERLERL 176

Query: 1926 APFVPGL-WCLFGDFNAI 1976
            A    G  W + GDFN +
Sbjct: 177  AVNRNGQPWFILGDFNEL 194


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 82.0 bits (201), Expect = 5e-13
 Identities = 43/142 (30%), Positives = 77/142 (54%)
 Frame = +3

Query: 1551 MTIHAWNYRGIGTTTVVQQLMDLIGKFDVDIVCLFETKASKDGIEKLGKKLKFSRHFAVP 1730
            M I +WN +G+G T  V+ L ++ G +  +++ L ETK  ++ +E +   L F     V 
Sbjct: 1    MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 1731 AKGLSGGLAILSKEGVELEILGSSRNQVTGKILNYFHKDPWFFSFVYGEPVAHNRNKVWT 1910
              G SGGLA++ K+ V++++L S +  +   ++  +    ++ + +YGEPV   R ++W 
Sbjct: 61   PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLI--WQDKEFYLTCIYGEPVQAERGELWE 118

Query: 1911 ELKEVAPFVPGLWCLFGDFNAI 1976
             L  +     G W L GDFN +
Sbjct: 119  RLTRLGLSRSGPWMLTGDFNEL 140