BLASTX nr result
ID: Coptis25_contig00012849
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00012849
(216 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADV19261.1| putative zinc finger protein-like protein [Helleb... 140 1e-31
ref|XP_002283925.1| PREDICTED: cellular nucleic acid-binding pro... 130 8e-29
gb|AAT08682.1| ring zinc finger protein [Hyacinthus orientalis] 116 2e-24
gb|AAQ89709.1| putative zinc finger protein [Hyacinthus orientalis] 116 2e-24
gb|AEW08231.1| Pinus taeda anonymous locus 2_3682_01 genomic seq... 115 5e-24
>gb|ADV19261.1| putative zinc finger protein-like protein [Helleborus orientalis]
Length = 156
Score = 140 bits (352), Expect = 1e-31
Identities = 58/71 (81%), Positives = 63/71 (88%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIG 36
QCKN+PICH+CGK GH+AR+CSGSGLPLHD RLCNNCYKPGHIA CTNEK NNCR G
Sbjct: 14 QCKNDPICHICGKTGHIARECSGSGLPLHDLRLCNNCYKPGHIAAACTNEKACNNCRKTG 73
Query: 35 HLARKCPNEPV 3
HLAR+CPNEPV
Sbjct: 74 HLARECPNEPV 84
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGL-------PLHDSRLCNNCYKPGHIAIDCTNE-KV 60
+C NEP+C++C GH+AR C S L P D +C +C PGHI+ DC V
Sbjct: 78 ECPNEPVCNLCNVAGHVARQCPKSSLASEITGGPFRDI-VCRSCGLPGHISRDCGGAIVV 136
Query: 59 *NNCRIIGHLARKCPN 12
NNC GH +CP+
Sbjct: 137 CNNCGGRGHHPFECPS 152
>ref|XP_002283925.1| PREDICTED: cellular nucleic acid-binding protein [Vitis vinifera]
gi|296086261|emb|CBI31702.3| unnamed protein product
[Vitis vinifera]
Length = 238
Score = 130 bits (328), Expect = 8e-29
Identities = 54/71 (76%), Positives = 59/71 (83%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIG 36
QC N+P+CH+CGK+GHLARDCS GLP HD+RLCNNCYKPGHIA DCTNEK NNC G
Sbjct: 91 QCPNDPVCHMCGKMGHLARDCSSPGLPAHDARLCNNCYKPGHIAADCTNEKACNNCHKTG 150
Query: 35 HLARKCPNEPV 3
HLAR C NEPV
Sbjct: 151 HLARDCLNEPV 161
Score = 66.6 bits (161), Expect = 2e-09
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = -2
Query: 209 KNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIGHL 30
+ + +C+ C + GH ARDC + +CNNC PGHIA +C + + NC+ GHL
Sbjct: 36 RQDYLCNKCKRPGHFARDCP-------NVTVCNNCGLPGHIAAECNSTTMCWNCKESGHL 88
Query: 29 ARKCPNEPV 3
A +CPN+PV
Sbjct: 89 ASQCPNDPV 97
Score = 65.5 bits (158), Expect = 4e-09
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Frame = -2
Query: 212 CKNEPICHVCGKVGHLARDCSGSGL------PLHDSRLCNNCYKPGHIAIDCTNEKV*NN 51
C NEP+C++C GH+AR C S L P D C+NC +PGHI+ DC + + NN
Sbjct: 156 CLNEPVCNICNISGHVARQCPKSRLVPETGGPFRDIT-CHNCGQPGHISRDCVSIVICNN 214
Query: 50 CRIIGHLARKCPN 12
C GH + +CP+
Sbjct: 215 CGGRGHQSFECPS 227
>gb|AAT08682.1| ring zinc finger protein [Hyacinthus orientalis]
Length = 196
Score = 116 bits (290), Expect = 2e-24
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIG 36
+C NE +CH C K GHLARDCS SGL D+RLCNNC++PGHIA DCTN+K NNCR G
Sbjct: 95 ECSNEAVCHNCNKTGHLARDCSASGLSSFDTRLCNNCHRPGHIAADCTNDKTCNNCRKPG 154
Query: 35 HLARKCPNEPV 3
HLAR+C N+PV
Sbjct: 155 HLARECTNDPV 165
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Frame = -2
Query: 209 KNEPICHVCGKVGHLARDCS------GSGLPLHDSR------LCNNCYKPGHIAIDCTNE 66
+ + IC C + GH ARDCS GLP H + LC NC +PGH+A +C+NE
Sbjct: 40 RQDVICKNCKRPGHFARDCSHIAVCNNCGLPGHIAAECTAKTLCWNCKEPGHMANECSNE 99
Query: 65 KV*NNCRIIGHLARKC 18
V +NC GHLAR C
Sbjct: 100 AVCHNCNKTGHLARDC 115
>gb|AAQ89709.1| putative zinc finger protein [Hyacinthus orientalis]
Length = 244
Score = 116 bits (290), Expect = 2e-24
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIG 36
+C NE +CH C K GHLARDCS SGL D+RLCNNC++PGHIA DCTN+K NNCR G
Sbjct: 95 ECSNEAVCHNCNKTGHLARDCSASGLSSFDTRLCNNCHRPGHIAADCTNDKTCNNCRKPG 154
Query: 35 HLARKCPNEPV 3
HLAR+C N+PV
Sbjct: 155 HLARECTNDPV 165
Score = 66.6 bits (161), Expect = 2e-09
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLP--LHDSR----LCNNCYKPGHIAIDCTNEKV*N 54
+C N+P+C+VC GH+AR C S LP +H +C C +PGHI+ DC + N
Sbjct: 159 ECTNDPVCNVCNVSGHVARQCPKSNLPSEIHGGPFRDIICRVCNQPGHISRDCVGIVICN 218
Query: 53 NCRIIGHLARKCPN 12
C GH+A +CP+
Sbjct: 219 TCGGRGHMAYECPS 232
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 12/76 (15%)
Frame = -2
Query: 209 KNEPICHVCGKVGHLARDCS------GSGLPLHDSR------LCNNCYKPGHIAIDCTNE 66
+ + IC C + GH ARDCS GLP H + LC NC +PGH+A +C+NE
Sbjct: 40 RQDVICKNCKRPGHFARDCSHIAVCNNCGLPGHIAAECTAKTLCWNCKEPGHMANECSNE 99
Query: 65 KV*NNCRIIGHLARKC 18
V +NC GHLAR C
Sbjct: 100 AVCHNCNKTGHLARDC 115
>gb|AEW08231.1| Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139387|gb|AFG50921.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139389|gb|AFG50922.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139391|gb|AFG50923.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139393|gb|AFG50924.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139395|gb|AFG50925.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139397|gb|AFG50926.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139399|gb|AFG50927.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139401|gb|AFG50928.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139403|gb|AFG50929.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139405|gb|AFG50930.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139407|gb|AFG50931.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139409|gb|AFG50932.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139411|gb|AFG50933.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139413|gb|AFG50934.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139415|gb|AFG50935.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence gi|383139417|gb|AFG50936.1|
Pinus taeda anonymous locus 2_3682_01 genomic sequence
gi|383139419|gb|AFG50937.1| Pinus taeda anonymous locus
2_3682_01 genomic sequence
Length = 139
Score = 115 bits (287), Expect = 5e-24
Identities = 49/71 (69%), Positives = 53/71 (74%)
Frame = -2
Query: 215 QCKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIG 36
QC N+PICH CGK GHL+RDC+ LP D RLCNNCYK GHIA +CTNEK NNCR G
Sbjct: 43 QCSNDPICHTCGKSGHLSRDCTAPELPPGDIRLCNNCYKQGHIAAECTNEKACNNCRKTG 102
Query: 35 HLARKCPNEPV 3
HLAR C N PV
Sbjct: 103 HLARDCTNNPV 113
Score = 58.9 bits (141), Expect = 4e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = -2
Query: 212 CKNEPICHVCGKVGHLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIGH 33
C N +C+ CG GH+A +C+ L C NC +PGH+A C+N+ + + C GH
Sbjct: 6 CPNVAVCNNCGLPGHIAVECTTKSL-------CWNCREPGHVASQCSNDPICHTCGKSGH 58
Query: 32 LARKC 18
L+R C
Sbjct: 59 LSRDC 63
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = -2
Query: 170 HLARDCSGSGLPLHDSRLCNNCYKPGHIAIDCTNEKV*NNCRIIGHLARKCPNEPV 3
H ARDC + CNNC PGHIA++CT + + NCR GH+A +C N+P+
Sbjct: 1 HFARDCPNVAV-------CNNCGLPGHIAVECTTKSLCWNCREPGHVASQCSNDPI 49