BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012784
         (842 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana...   150   3e-34
ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus...   149   8e-34
ref|NP_001241947.1| uncharacterized protein LOC100786192 [Glycin...   148   1e-33
ref|NP_001237852.1| uncharacterized protein LOC100499656 [Glycin...   147   2e-33
ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arab...   147   4e-33

>ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana]
           gi|75308015|sp|Q9ASV6.1|RR20_ARATH RecName: Full=30S
           ribosomal protein S20, chloroplastic; Flags: Precursor
           gi|188036221|pdb|3BBN|T Chain T, Homology Model For The
           Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em
           Map Of The 70s Chlororibosome.
           gi|13605653|gb|AAK32820.1|AF361807_1 AT3g15190/F4B12_10
           [Arabidopsis thaliana]
           gi|13899121|gb|AAK48982.1|AF370555_1 Unknown protein
           [Arabidopsis thaliana] gi|15777889|gb|AAL05905.1|
           AT3g15190/F4B12_10 [Arabidopsis thaliana]
           gi|18377542|gb|AAL66937.1| unknown protein [Arabidopsis
           thaliana] gi|21592469|gb|AAM64420.1| 30S ribosomal
           protein S20 [Arabidopsis thaliana]
           gi|332642109|gb|AEE75630.1| 30S ribosomal protein S20
           [Arabidopsis thaliana]
          Length = 202

 Score =  150 bits (379), Expect = 3e-34
 Identities = 86/191 (45%), Positives = 108/191 (56%), Gaps = 5/191 (2%)
 Frame = +2

Query: 56  IHCVSSCFSLQKKFPT-----INCTTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG 220
           + C+SSC +L+ +F       I+C++ S                               G
Sbjct: 5   VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTG 64

Query: 221 GLWMXXXXXXXXXXXXXXXATTKKPDSXXXXXXXXXXXXIYNKSKKSELKTRMKKVLEAL 400
            LW+               A TKK DS            +YNKSKKSE +TRMKKVLEAL
Sbjct: 65  NLWVQKPMRQLIVCEAA--APTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEAL 122

Query: 401 DVLQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHH 580
           + L+KKTDAQ+ E++++EKLI EAYSAIDKAVK  ALH+NTGA RKSRLARRKK VEIHH
Sbjct: 123 EGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182

Query: 581 GWYTPASSLSA 613
           GWY P ++ +A
Sbjct: 183 GWYVPDAAAAA 193


>ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus communis]
           gi|223528058|gb|EEF30134.1| 30S ribosomal protein S20,
           putative [Ricinus communis]
          Length = 185

 Score =  149 bits (376), Expect = 8e-34
 Identities = 90/184 (48%), Positives = 104/184 (56%)
 Frame = +2

Query: 47  MAAIHCVSSCFSLQKKFPTINCTTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGL 226
           MAA   +SSCFS+  K  +++ TT+S                               G L
Sbjct: 1   MAAAAVLSSCFSVPTKLKSLSLTTTSSSTITYPALRSLSFSSAISHDVFN------KGCL 54

Query: 227 WMXXXXXXXXXXXXXXXATTKKPDSXXXXXXXXXXXXIYNKSKKSELKTRMKKVLEALDV 406
            M               A  K+ DS            IY+K+ KSE++TRMKKVLEALD 
Sbjct: 55  SMSIVKRPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDD 114

Query: 407 LQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 586
           L+KK+DAQ+ EVL IEKLIAEAYS IDKAVK G LHRNTGA RKSRLARRKK VEIHHGW
Sbjct: 115 LRKKSDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGW 174

Query: 587 YTPA 598
           YTPA
Sbjct: 175 YTPA 178


>ref|NP_001241947.1| uncharacterized protein LOC100786192 [Glycine max]
           gi|255640470|gb|ACU20521.1| unknown [Glycine max]
          Length = 164

 Score =  148 bits (374), Expect = 1e-33
 Identities = 75/111 (67%), Positives = 84/111 (75%)
 Frame = +2

Query: 278 ATTKKPDSXXXXXXXXXXXXIYNKSKKSELKTRMKKVLEALDVLQKKTDAQSVEVLSIEK 457
           A  KK DS            +YNK++KSE+KTR KKVLEAL+VL+KK DAQ+ E+LSIEK
Sbjct: 53  AAPKKVDSAVKRARQAEKRRVYNKARKSEIKTRTKKVLEALEVLKKKQDAQAEEILSIEK 112

Query: 458 LIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPASSLS 610
           LI EAYS IDKAV+ G LHRNTGANRKSRLARRKK VEIHHGWYTP    S
Sbjct: 113 LIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPTPEAS 163


>ref|NP_001237852.1| uncharacterized protein LOC100499656 [Glycine max]
           gi|255625577|gb|ACU13133.1| unknown [Glycine max]
          Length = 180

 Score =  147 bits (372), Expect = 2e-33
 Identities = 74/107 (69%), Positives = 84/107 (78%)
 Frame = +2

Query: 278 ATTKKPDSXXXXXXXXXXXXIYNKSKKSELKTRMKKVLEALDVLQKKTDAQSVEVLSIEK 457
           A  KK DS            +YNK++KSE+KTR KKVLEAL+VL+KK+DAQ+ E+L IEK
Sbjct: 69  APKKKVDSAVKRARQAEKHRVYNKARKSEIKTRTKKVLEALEVLKKKSDAQAEEILPIEK 128

Query: 458 LIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPA 598
           LI EAYS IDKAV+ G LHRNTGANRKSRLARRKK VEIHHGWYTPA
Sbjct: 129 LIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPA 175


>ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arabidopsis lyrata subsp.
           lyrata] gi|297328759|gb|EFH59178.1| hypothetical protein
           ARALYDRAFT_897793 [Arabidopsis lyrata subsp. lyrata]
          Length = 197

 Score =  147 bits (370), Expect = 4e-33
 Identities = 85/183 (46%), Positives = 104/183 (56%), Gaps = 3/183 (1%)
 Frame = +2

Query: 56  IHCVSSCFSLQKKFPTINC---TTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGL 226
           + C+SSC +L+ +F  ++    ++SS                              +G L
Sbjct: 5   VQCLSSCATLESQFKVLSLKGISSSSSFSNRRGGASATLSSSLSFSQSVSQCVAFSSGNL 64

Query: 227 WMXXXXXXXXXXXXXXXATTKKPDSXXXXXXXXXXXXIYNKSKKSELKTRMKKVLEALDV 406
           W+               A TKK DS            IYNKSKKSE +TRMKKVLEAL+ 
Sbjct: 65  WVQKPTRQLIVCEAA--APTKKADSAAKRARQAEKRRIYNKSKKSEARTRMKKVLEALEG 122

Query: 407 LQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 586
           L+KKTDAQ  E++++EKLI EAYSAIDKAVK  ALH+NTGA RKSRLARRKK VEIHHGW
Sbjct: 123 LKKKTDAQPDEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGW 182

Query: 587 YTP 595
           Y P
Sbjct: 183 YVP 185