BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012772
         (911 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16435.3| unnamed protein product [Vitis vinifera]              340   4e-91
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik...   325   1e-86
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal...   314   2e-83
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara...   314   2e-83
ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arab...   313   4e-83

>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score =  340 bits (871), Expect = 4e-91
 Identities = 173/214 (80%), Positives = 189/214 (88%), Gaps = 1/214 (0%)
 Frame = -1

Query: 911  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 732
            GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKGT
Sbjct: 459  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKGT 518

Query: 731  GKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIHG 552
            GKEYIGDDI EIASAVK+SIQQCC+QLKSKIVKKIQAR QQERKRNLSKYIPD T AI+ 
Sbjct: 519  GKEYIGDDISEIASAVKSSIQQCCIQLKSKIVKKIQARVQQERKRNLSKYIPDATGAIYD 578

Query: 551  ILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQS 375
            +L + AQ HA KK+RYE E+A+VL+KVS   +TK+ L E+LAKHVEQVDYEMAL+YA QS
Sbjct: 579  VLREMAQLHASKKKRYEDEDADVLRKVSTHSITKQTLSEKLAKHVEQVDYEMALEYATQS 638

Query: 374  GVSEEPREAIYIQALEGGHNFTDLHSSVCVLRLF 273
            GVSEEPREAIY+Q+LE G NF D HS V   RL+
Sbjct: 639  GVSEEPREAIYLQSLEDGKNFIDFHSPVFAFRLY 672


>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
            gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
            topoisomerase 6 subunit B-like [Cucumis sativus]
          Length = 696

 Score =  325 bits (832), Expect = 1e-86
 Identities = 161/213 (75%), Positives = 189/213 (88%), Gaps = 1/213 (0%)
 Frame = -1

Query: 911  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 732
            GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQ QDKIGVFVSIVSTKIPFKGT
Sbjct: 482  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQAQDKIGVFVSIVSTKIPFKGT 541

Query: 731  GKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIHG 552
            GKEYIGDDI EIASAVK++IQQCC+QLKSKIVKKIQAREQQERKRNLS+YIPD TNA++ 
Sbjct: 542  GKEYIGDDISEIASAVKSAIQQCCIQLKSKIVKKIQAREQQERKRNLSRYIPDATNAVYN 601

Query: 551  ILSDTAQQHA-KKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQS 375
            +L + AQ HA KK+R++ E+AE+L KVSA+++T E LR++LA+HVEQVD+EMA++YA QS
Sbjct: 602  VLKEMAQVHASKKKRHDCEDAEILSKVSARLITNETLRDKLAQHVEQVDHEMAMEYATQS 661

Query: 374  GVSEEPREAIYIQALEGGHNFTDLHSSVCVLRL 276
            G S E +E +YIQ+L+  H+FTD  S + V RL
Sbjct: 662  GASAEAKEEMYIQSLDATHSFTDFQSPLFVFRL 694


>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
            gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
            topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
            Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
            Full=Protein ELONGATED HYPOCOTYL 6; AltName: Full=Protein
            ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1| topoisomerase
            6 subunit B [Arabidopsis thaliana]
            gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B
            [Arabidopsis thaliana]
          Length = 670

 Score =  314 bits (804), Expect = 2e-83
 Identities = 158/214 (73%), Positives = 185/214 (86%), Gaps = 2/214 (0%)
 Frame = -1

Query: 911  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 732
            G+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT
Sbjct: 455  GINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 514

Query: 731  GKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIHG 552
            GKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++ 
Sbjct: 515  GKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYE 574

Query: 551  ILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQS 375
            +L    ++H  K++RY  E+  +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA QS
Sbjct: 575  VLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQS 634

Query: 374  GVSEEPREAIYIQALE-GGHNFTDLHSSVCVLRL 276
            GVSEEPRE IY+Q L+    NF DLHS   V RL
Sbjct: 635  GVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 668


>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
          Length = 694

 Score =  314 bits (804), Expect = 2e-83
 Identities = 158/214 (73%), Positives = 185/214 (86%), Gaps = 2/214 (0%)
 Frame = -1

Query: 911  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 732
            G+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT
Sbjct: 479  GINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 538

Query: 731  GKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIHG 552
            GKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++ 
Sbjct: 539  GKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYE 598

Query: 551  ILSDTAQQH-AKKRRYEGEEAEVLKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQS 375
            +L    ++H  K++RY  E+  +L KVS +++TKE L+E+LA+HVEQVDYEMAL+YA QS
Sbjct: 599  VLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQS 658

Query: 374  GVSEEPREAIYIQALE-GGHNFTDLHSSVCVLRL 276
            GVSEEPRE IY+Q L+    NF DLHS   V RL
Sbjct: 659  GVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRL 692


>ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp.
            lyrata] gi|297331244|gb|EFH61663.1| hypothetical protein
            ARALYDRAFT_318827 [Arabidopsis lyrata subsp. lyrata]
          Length = 691

 Score =  313 bits (802), Expect = 4e-83
 Identities = 160/214 (74%), Positives = 183/214 (85%), Gaps = 2/214 (0%)
 Frame = -1

Query: 911  GLNIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 732
            G+NIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT
Sbjct: 476  GINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGT 535

Query: 731  GKEYIGDDIKEIASAVKTSIQQCCVQLKSKIVKKIQAREQQERKRNLSKYIPDVTNAIHG 552
            GKEYIGDDI EIA+AVK++IQQCC+QLKSKIVK++QAREQQERKR+LS+YIPD T A++ 
Sbjct: 536  GKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYE 595

Query: 551  ILSDTAQQHAKKRRYEGEEAEV-LKKVSAKVLTKEMLREELAKHVEQVDYEMALDYAMQS 375
            +L    ++H  KR+  GEE  V L KVS  ++TKE L+E+LA+HVEQVDYEMAL+YA QS
Sbjct: 596  VLKQMTEEHTTKRKRYGEEDTVMLNKVSKHIITKETLKEKLAEHVEQVDYEMALEYATQS 655

Query: 374  GVSEEPREAIYIQALE-GGHNFTDLHSSVCVLRL 276
            GVSEEPRE IY+Q L+    NF DLHS   V RL
Sbjct: 656  GVSEEPRENIYLQHLDPNKSNFIDLHSPNFVFRL 689