BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012662
         (996 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   632   e-179
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   625   e-177
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   624   e-176
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   620   e-175
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...   619   e-175

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  632 bits (1629), Expect = e-179
 Identities = 317/332 (95%), Positives = 323/332 (97%)
 Frame = -1

Query: 996  FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 817
            FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+++KKGHD
Sbjct: 82   FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHD 141

Query: 816  CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 637
             EEVTE  E   KVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 142  LEEVTETQE-FTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKV 200

Query: 636  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 457
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ
Sbjct: 201  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 260

Query: 456  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 277
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ
Sbjct: 261  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ 320

Query: 276  LVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 97
             VALDYIGKRGSTVGVT+EKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 321  QVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 380

Query: 96   CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1
            CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 381  CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 412


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  625 bits (1612), Expect = e-177
 Identities = 315/332 (94%), Positives = 321/332 (96%)
 Frame = -1

Query: 996  FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 817
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 816  CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 637
             EEVTE  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 143  GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201

Query: 636  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 457
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261

Query: 456  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 277
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD QMMELLRPSLEEAFVIQNQ
Sbjct: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ 321

Query: 276  LVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 97
             VALDYIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 96   CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1
            CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  624 bits (1609), Expect = e-176
 Identities = 314/332 (94%), Positives = 321/332 (96%)
 Frame = -1

Query: 996  FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 817
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+V+KKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 816  CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 637
             EEVTE  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 140  GEEVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 198

Query: 636  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 457
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQ
Sbjct: 199  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 258

Query: 456  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 277
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+D QMMELLRPSLEEAFVIQNQ
Sbjct: 259  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQ 318

Query: 276  LVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 97
             VALDYIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 319  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378

Query: 96   CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1
            CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 379  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  620 bits (1600), Expect = e-175
 Identities = 312/332 (93%), Positives = 321/332 (96%)
 Frame = -1

Query: 996  FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 817
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K+V+KKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHD 142

Query: 816  CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 637
             EEVTE  + + KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 143  GEEVTETQD-LTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201

Query: 636  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 457
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTS+KGGSSGQ
Sbjct: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQ 261

Query: 456  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 277
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD  MMELLRPSLEEAFVIQNQ
Sbjct: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQ 321

Query: 276  LVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 97
             VALDYIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 96   CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1
            CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  619 bits (1596), Expect = e-175
 Identities = 312/332 (93%), Positives = 320/332 (96%)
 Frame = -1

Query: 996  FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKQVMKKGHD 817
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K+V+KKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 816  CEEVTEPPETIPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 637
             EEVTE  +   KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV
Sbjct: 143  GEEVTEAQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201

Query: 636  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQ 457
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTS+KGGSSGQ
Sbjct: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQ 261

Query: 456  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDNQMMELLRPSLEEAFVIQNQ 277
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS  QMMELLRPSLEEAFVIQNQ
Sbjct: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQ 321

Query: 276  LVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGVGEYYETKKAYYFGYIIHRLLL 97
             VALDYIGKRG+TVGVTKEKRIKYA+EILQKEMLPHVGVGEY ETKKAYYFGYIIHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 96   CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 1
            CALGRR EDDRDHYGNKRLDLAGPLLGGLFRM
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413