BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012604
         (1899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subun...   625   e-177
emb|CBI34928.3| unnamed protein product [Vitis vinifera]              608   e-171
ref|XP_002517336.1| protein farnesyltransferase beta subunit, pu...   599   e-169
ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subun...   582   e-164
ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subun...   577   e-162

>ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subunit beta-like isoform 1
            [Vitis vinifera]
          Length = 438

 Score =  625 bits (1613), Expect = e-177
 Identities = 300/433 (69%), Positives = 358/433 (82%), Gaps = 4/433 (0%)
 Frame = +1

Query: 22   TITQREQWMVESKVSEIYQLFSSFPHHAQTLMLDVQRDEHMEYLNKGLKQLGPSFCVLDA 201
            T+TQREQWMVES+V ++Y+L SS P +AQ+++L++QRD+H+E+L  GL+QLGPSFCVLDA
Sbjct: 10   TVTQREQWMVESQVFQMYELLSSVPRNAQSVLLELQRDKHIEFLTNGLRQLGPSFCVLDA 69

Query: 202  NRPWLCYWILHSMALLGESVDCDLENGAVDFLSCCQDSHXXXXXXXXQMPHLATTYAAVN 381
            NRPWLCYWILHS+ALLG+SVD +LEN  +DFLS CQD +        QMPHLATTYAA+N
Sbjct: 70   NRPWLCYWILHSIALLGDSVDDELENNTIDFLSRCQDPNGGYGGGPGQMPHLATTYAAIN 129

Query: 382  SLLTLGGERALSSINREKLHKFLLHMKDQSGGFRMHNAGEMDVRACYTAISVASILNILD 561
            +L+TLGG R+LSSINR K++ FL  MKD SG FRMH+AGEMDVRACYTAISVAS+L ILD
Sbjct: 130  ALITLGGHRSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYTAISVASVLTILD 189

Query: 562  DELVQNVGNFILRCQTYEGGIAGEPGSEAHGGYTFCGLATMILIDEADRLDLPSLLDWVV 741
            DELV+ VGNFIL CQTYEGGI+GEPGSEAHGGYTFCGLATM+LI E +RLDL SL+DWVV
Sbjct: 190  DELVKGVGNFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVV 249

Query: 742  FRQGVECGFQGRANKLVDGCYSFWQGGVFALIQRLPSVAGQHLKLNVGEGETRGSTQNVG 921
            FRQGVE GFQGR NKLVDGCYSFWQGGVFALIQ+L S+  + L+L    G    S Q   
Sbjct: 250  FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDAGGSAIDSPQ--- 306

Query: 922  SFNVSDLEEGSGSLNTYDKN----YSDIGFSYIKRPAESGPLFHSIALQQYILLCSQVQE 1089
               ++ +   SG    +D +    +S+IGF+++K PAE  PLFHSIALQQYI+LCSQ+QE
Sbjct: 307  ---LASISCHSGKRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYIILCSQLQE 363

Query: 1090 GGFKDKPGKSRDYYHTCYCLSGLSVCQHCWSKDADSSPFPKAVFGPYSNLLEPIHPLYNI 1269
            GGF+DKPGK RDYYHTCYCLSGLSV Q+ +SKDADS P P+AVFGPYSNLLEPIHPLYN+
Sbjct: 364  GGFRDKPGKHRDYYHTCYCLSGLSVAQYSYSKDADSPPLPRAVFGPYSNLLEPIHPLYNV 423

Query: 1270 MLDRYYKAHDFFS 1308
            +LD Y++AH+FFS
Sbjct: 424  ILDLYHEAHEFFS 436


>emb|CBI34928.3| unnamed protein product [Vitis vinifera]
          Length = 421

 Score =  608 bits (1569), Expect = e-171
 Identities = 293/425 (68%), Positives = 350/425 (82%), Gaps = 4/425 (0%)
 Frame = +1

Query: 46   MVESKVSEIYQLFSSFPHHAQTLMLDVQRDEHMEYLNKGLKQLGPSFCVLDANRPWLCYW 225
            MVES+V ++Y+L SS P +AQ+++L++QRD+H+E+L  GL+QLGPSFCVLDANRPWLCYW
Sbjct: 1    MVESQVFQMYELLSSVPRNAQSVLLELQRDKHIEFLTNGLRQLGPSFCVLDANRPWLCYW 60

Query: 226  ILHSMALLGESVDCDLENGAVDFLSCCQDSHXXXXXXXXQMPHLATTYAAVNSLLTLGGE 405
            ILHS+ALLG+SVD +LEN  +DFLS CQD +        QMPHLATTYAA+N+L+TLGG 
Sbjct: 61   ILHSIALLGDSVDDELENNTIDFLSRCQDPNGGYGGGPGQMPHLATTYAAINALITLGGH 120

Query: 406  RALSSINREKLHKFLLHMKDQSGGFRMHNAGEMDVRACYTAISVASILNILDDELVQNVG 585
            R+LSSINR K++ FL  MKD SG FRMH+AGEMDVRACYTAISVAS+L ILDDELV+ VG
Sbjct: 121  RSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYTAISVASVLTILDDELVKGVG 180

Query: 586  NFILRCQTYEGGIAGEPGSEAHGGYTFCGLATMILIDEADRLDLPSLLDWVVFRQGVECG 765
            NFIL CQTYEGGI+GEPGSEAHGGYTFCGLATM+LI E +RLDL SL+DWVVFRQGVE G
Sbjct: 181  NFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVVFRQGVEGG 240

Query: 766  FQGRANKLVDGCYSFWQGGVFALIQRLPSVAGQHLKLNVGEGETRGSTQNVGSFNVSDLE 945
            FQGR NKLVDGCYSFWQGGVFALIQ+L S+  + L+L    G    S Q      ++ + 
Sbjct: 241  FQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDAGGSAIDSPQ------LASIS 294

Query: 946  EGSGSLNTYDKN----YSDIGFSYIKRPAESGPLFHSIALQQYILLCSQVQEGGFKDKPG 1113
              SG    +D +    +S+IGF+++K PAE  PLFHSIALQQYI+LCSQ+QEGGF+DKPG
Sbjct: 295  CHSGKRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYIILCSQLQEGGFRDKPG 354

Query: 1114 KSRDYYHTCYCLSGLSVCQHCWSKDADSSPFPKAVFGPYSNLLEPIHPLYNIMLDRYYKA 1293
            K RDYYHTCYCLSGLSV Q+ +SKDADS P P+AVFGPYSNLLEPIHPLYN++LD Y++A
Sbjct: 355  KHRDYYHTCYCLSGLSVAQYSYSKDADSPPLPRAVFGPYSNLLEPIHPLYNVILDLYHEA 414

Query: 1294 HDFFS 1308
            H+FFS
Sbjct: 415  HEFFS 419


>ref|XP_002517336.1| protein farnesyltransferase beta subunit, putative [Ricinus communis]
            gi|223543347|gb|EEF44878.1| protein farnesyltransferase
            beta subunit, putative [Ricinus communis]
          Length = 438

 Score =  599 bits (1544), Expect = e-169
 Identities = 296/441 (67%), Positives = 350/441 (79%), Gaps = 5/441 (1%)
 Frame = +1

Query: 1    SMSNSRVTITQREQWMVESKVSEIYQLFSSFPHHAQTLMLDVQRDEHMEYLNKGLKQLGP 180
            S S  R T +Q EQW+V+ +V +IY +F++ PH AQTLML++QRD+HMEYL +GLKQL  
Sbjct: 6    SSSRRRATASQHEQWIVQDQVFQIYDIFANIPHKAQTLMLELQRDKHMEYLTRGLKQLSS 65

Query: 181  SFCVLDANRPWLCYWILHSMALLGESVDCDLENGAVDFLSCCQDSHXXXXXXXXQMPHLA 360
            SFCVLDANRPWLCYWILHS+ALLGES+D +LEN A+DFL+ CQD +        Q+PHLA
Sbjct: 66   SFCVLDANRPWLCYWILHSIALLGESIDYELENNAIDFLNRCQDPNGGFGGGPGQLPHLA 125

Query: 361  TTYAAVNSLLTLGGERALSSINREKLHKFLLHMKDQSGGFRMHNAGEMDVRACYTAISV- 537
            TTYAAVNSL+TLGG RALSSINR KL+ FL  MKD SG FRMH+AGE+DVRACYTAISV 
Sbjct: 126  TTYAAVNSLVTLGGPRALSSINRGKLYTFLRRMKDPSGPFRMHDAGEIDVRACYTAISVC 185

Query: 538  ASILNILDDELVQNVGNFILRCQTYEGGIAGEPGSEAHGGYTFCGLATMILIDEADRLDL 717
            A+ILNILDDELV++VGN+IL CQTYEGGIAGEPGSEAHGGYTFCGLATMILI+E +RLDL
Sbjct: 186  ANILNILDDELVRDVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILINEVNRLDL 245

Query: 718  PSLLDWVVFRQGVECGFQGRANKLVDGCYSFWQGGVFALIQRLPSVAGQHLKLN---VGE 888
             SL++WVVFRQGVECGFQGR NKLVDGCYSFWQGGVFAL+QRL S+ G+H   +    G 
Sbjct: 246  SSLINWVVFRQGVECGFQGRTNKLVDGCYSFWQGGVFALLQRLRSIGGEHAAFSDAEAGH 305

Query: 889  GETRGSTQNVGSFNVS-DLEEGSGSLNTYDKNYSDIGFSYIKRPAESGPLFHSIALQQYI 1065
              T  S+++ G+   S D++E          ++   G         + PLFHS ALQQYI
Sbjct: 306  CATESSSEDEGTDGDSTDVDEPG--------HFKQGGHGV------TVPLFHSSALQQYI 351

Query: 1066 LLCSQVQEGGFKDKPGKSRDYYHTCYCLSGLSVCQHCWSKDADSSPFPKAVFGPYSNLLE 1245
            +LCSQ QEGGF+DKPGK+RDYYHTCYCLSGLSVCQ+ WSKD +S P P+AV GPYSNLLE
Sbjct: 352  ILCSQEQEGGFRDKPGKARDYYHTCYCLSGLSVCQYSWSKDENSPPLPRAVLGPYSNLLE 411

Query: 1246 PIHPLYNIMLDRYYKAHDFFS 1308
            PIHPLYN++  +Y  AH+FFS
Sbjct: 412  PIHPLYNVVSKQYDGAHEFFS 432


>ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subunit beta [Glycine max]
          Length = 455

 Score =  582 bits (1501), Expect = e-164
 Identities = 276/433 (63%), Positives = 339/433 (78%), Gaps = 5/433 (1%)
 Frame = +1

Query: 22   TITQREQWMVESKVSEIYQLFSSFPHHAQTLMLDVQRDEHMEYLNKGLKQLGPSFCVLDA 201
            T++QREQWMVES+V +IYQLF++ P +AQTLML++QRD HM+Y++KGL+ L  +F VLDA
Sbjct: 19   TVSQREQWMVESQVFQIYQLFATIPRNAQTLMLELQRDNHMQYVSKGLRHLSSAFSVLDA 78

Query: 202  NRPWLCYWILHSMALLGESVDCDLENGAVDFLSCCQDSHXXXXXXXXQMPHLATTYAAVN 381
            NRPWLCYWI HS+AL GESVD +LE+ A+DFL+ CQD +        QMPH+ATTYAAVN
Sbjct: 79   NRPWLCYWIFHSIALSGESVDDELEDNAIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVN 138

Query: 382  SLLTLGGERALSSINREKLHKFLLHMKDQSGGFRMHNAGEMDVRACYTAISVASILNILD 561
            SL+TLGGE++L+SINR+KL+ FL  MK  +GGFRMH+ GE+DVRACYTAISVAS+LNILD
Sbjct: 139  SLITLGGEKSLASINRDKLYGFLRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILD 198

Query: 562  DELVQNVGNFILRCQTYEGGIAGEPGSEAHGGYTFCGLATMILIDEADRLDLPSLLDWVV 741
            DEL+QNVG++I+ CQTYEGGIAGEPGSEAHGGYTFCGLATMILI E + LDLP L+DWVV
Sbjct: 199  DELIQNVGDYIISCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNHLDLPRLVDWVV 258

Query: 742  FRQGVECGFQGRANKLVDGCYSFWQGGVFALIQRLPSVAGQHLK-----LNVGEGETRGS 906
            FRQG ECGFQGR NKLVDGCYSFWQGG  AL+QRL S+  + ++       V        
Sbjct: 259  FRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEETSQIFAVSYVSEAKE 318

Query: 907  TQNVGSFNVSDLEEGSGSLNTYDKNYSDIGFSYIKRPAESGPLFHSIALQQYILLCSQVQ 1086
            + +  S + +   E  G+  +   ++ +I + +I       PLFHSIALQQYILLC+Q Q
Sbjct: 319  SLDGTSSHATCRGEHEGTSESSSSDFKNIAYKFINEWRAQEPLFHSIALQQYILLCAQEQ 378

Query: 1087 EGGFKDKPGKSRDYYHTCYCLSGLSVCQHCWSKDADSSPFPKAVFGPYSNLLEPIHPLYN 1266
            EGG +DKPGK RD+YHTCYCLSGLS+CQ+ WSK  DS P P  V GPYSNLLEPIHPL+N
Sbjct: 379  EGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFN 438

Query: 1267 IMLDRYYKAHDFF 1305
            ++L RY +AH+FF
Sbjct: 439  VVLGRYREAHEFF 451


>ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subunit beta-like [Glycine
            max]
          Length = 455

 Score =  577 bits (1486), Expect = e-162
 Identities = 275/445 (61%), Positives = 339/445 (76%), Gaps = 17/445 (3%)
 Frame = +1

Query: 22   TITQREQWMVESKVSEIYQLFSSFPHHAQTLMLDVQRDEHMEYLNKGLKQLGPSFCVLDA 201
            T++QR+QWMVES+V +IYQLF++ P  AQ LML++QRD HM+YL+KGL+ L  +F VLDA
Sbjct: 19   TVSQRDQWMVESQVFQIYQLFATIPGSAQNLMLELQRDNHMQYLSKGLRHLSSAFSVLDA 78

Query: 202  NRPWLCYWILHSMALLGESVDCDLENGAVDFLSCCQDSHXXXXXXXXQMPHLATTYAAVN 381
            NRPWLCYWI HS+ALLGESVD +LE+  +DFL+ CQD +        QMPH+ATTYAAVN
Sbjct: 79   NRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVN 138

Query: 382  SLLTLGGERALSSINREKLHKFLLHMKDQSGGFRMHNAGEMDVRACYTAISVASILNILD 561
            +L+TLGG+++L+SINR+KL+ FL  MK  +GGFRMH+ GE+DVRACYTAISVAS+LNILD
Sbjct: 139  TLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILD 198

Query: 562  DELVQNVGNFILRCQTYEGGIAGEPGSEAHGGYTFCGLATMILIDEADRLDLPSLLDWVV 741
            DEL++NVG++IL CQTYEGGIAGEPGSEAHGGYTFCGLATMILI E +RLDLP L++W V
Sbjct: 199  DELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAV 258

Query: 742  FRQGVECGFQGRANKLVDGCYSFWQGGVFALIQRLPSVAGQHLKLNVGEGETRGSTQNVG 921
            FRQG ECGFQGR NKLVDGCYSFWQGG  AL+QRL S+  + ++            +   
Sbjct: 259  FRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQME------------EASQ 306

Query: 922  SFNVSDLEEGSGSLN-----------------TYDKNYSDIGFSYIKRPAESGPLFHSIA 1050
            +F +SD+ E   SL+                 +   +Y  IG+++I       PLFHSIA
Sbjct: 307  TFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIA 366

Query: 1051 LQQYILLCSQVQEGGFKDKPGKSRDYYHTCYCLSGLSVCQHCWSKDADSSPFPKAVFGPY 1230
            LQQYILLC+Q Q GG +DKPGK RD+YHTCYCLSGLS+CQ+ WSK  DS P P  V GPY
Sbjct: 367  LQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPY 426

Query: 1231 SNLLEPIHPLYNIMLDRYYKAHDFF 1305
            SNLLEPIHPL+N++L+RY +AH FF
Sbjct: 427  SNLLEPIHPLFNVVLERYREAHVFF 451