BLASTX nr result

ID: Coptis25_contig00012503 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012503
         (876 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ85536.1| unknown [Medicago truncatula]                          134   2e-29
ref|XP_003630114.1| GTP-binding protein, putative [Medicago trun...   134   2e-29
ref|XP_002279569.1| PREDICTED: uncharacterized GTP-binding prote...   134   4e-29
ref|XP_002533618.1| GTP-binding protein yptv3, putative [Ricinus...   132   8e-29
ref|XP_003531381.1| PREDICTED: uncharacterized GTP-binding prote...   132   1e-28

>gb|ACJ85536.1| unknown [Medicago truncatula]
          Length = 197

 Score =  134 bits (338), Expect = 2e-29
 Identities = 63/76 (82%), Positives = 72/76 (94%), Gaps = 3/76 (3%)
 Frame = +2

Query: 638 IQHTTYG---SSSNSIKGDADKDFFVELWDVSGHERYKDCRSLFYSQISGVIFVHDLSQR 808
           ++HTTYG   SSS+S+KGD+++DFFVELWDVSGHERYKDCRSLFYSQI+GVIFVHDLSQR
Sbjct: 60  VKHTTYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119

Query: 809 RTKASLQKWAAEVAAT 856
           RTK SLQKWAAE+AAT
Sbjct: 120 RTKTSLQKWAAEIAAT 135


>ref|XP_003630114.1| GTP-binding protein, putative [Medicago truncatula]
           gi|355524136|gb|AET04590.1| GTP-binding protein,
           putative [Medicago truncatula]
          Length = 342

 Score =  134 bits (338), Expect = 2e-29
 Identities = 63/76 (82%), Positives = 72/76 (94%), Gaps = 3/76 (3%)
 Frame = +2

Query: 638 IQHTTYG---SSSNSIKGDADKDFFVELWDVSGHERYKDCRSLFYSQISGVIFVHDLSQR 808
           ++HTTYG   SSS+S+KGD+++DFFVELWDVSGHERYKDCRSLFYSQI+GVIFVHDLSQR
Sbjct: 60  VKHTTYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119

Query: 809 RTKASLQKWAAEVAAT 856
           RTK SLQKWAAE+AAT
Sbjct: 120 RTKTSLQKWAAEIAAT 135


>ref|XP_002279569.1| PREDICTED: uncharacterized GTP-binding protein At5g64813 [Vitis
           vinifera] gi|147843269|emb|CAN80534.1| hypothetical
           protein VITISV_035973 [Vitis vinifera]
           gi|296082516|emb|CBI21521.3| unnamed protein product
           [Vitis vinifera]
          Length = 336

 Score =  134 bits (336), Expect = 4e-29
 Identities = 62/76 (81%), Positives = 72/76 (94%), Gaps = 3/76 (3%)
 Frame = +2

Query: 638 IQHTTYG---SSSNSIKGDADKDFFVELWDVSGHERYKDCRSLFYSQISGVIFVHDLSQR 808
           ++HT YG   SSSNSIKGD+++DFF+ELWDVSGH+RYK+CRSLFYSQI+GVIFVHDLSQR
Sbjct: 61  VKHTAYGNSGSSSNSIKGDSERDFFIELWDVSGHDRYKECRSLFYSQINGVIFVHDLSQR 120

Query: 809 RTKASLQKWAAEVAAT 856
           RTKASLQKWAAE+AAT
Sbjct: 121 RTKASLQKWAAEIAAT 136


>ref|XP_002533618.1| GTP-binding protein yptv3, putative [Ricinus communis]
           gi|223526492|gb|EEF28762.1| GTP-binding protein yptv3,
           putative [Ricinus communis]
          Length = 336

 Score =  132 bits (333), Expect = 8e-29
 Identities = 62/76 (81%), Positives = 71/76 (93%), Gaps = 3/76 (3%)
 Frame = +2

Query: 638 IQHTTYG---SSSNSIKGDADKDFFVELWDVSGHERYKDCRSLFYSQISGVIFVHDLSQR 808
           ++H TYG   SSS+S+KGDA++DFFVELWDVSGHERYKDCRSLFYSQI+GVIFVHDLSQR
Sbjct: 60  VKHVTYGNSGSSSSSLKGDAERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119

Query: 809 RTKASLQKWAAEVAAT 856
           RTK SLQKWA+E+AAT
Sbjct: 120 RTKTSLQKWASEIAAT 135


>ref|XP_003531381.1| PREDICTED: uncharacterized GTP-binding protein At5g64813-like
           [Glycine max]
          Length = 333

 Score =  132 bits (332), Expect = 1e-28
 Identities = 62/76 (81%), Positives = 71/76 (93%), Gaps = 3/76 (3%)
 Frame = +2

Query: 638 IQHTTYG---SSSNSIKGDADKDFFVELWDVSGHERYKDCRSLFYSQISGVIFVHDLSQR 808
           ++H TYG   SSS+S+KGD+++DFFVELWDVSGHERYKDCRSLFYSQI+GVIFVHDLSQR
Sbjct: 60  VKHITYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119

Query: 809 RTKASLQKWAAEVAAT 856
           RTK SLQKWAAE+AAT
Sbjct: 120 RTKTSLQKWAAEIAAT 135


Top