BLASTX nr result
ID: Coptis25_contig00012500
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00012500
(748 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60751.1| hypothetical protein VITISV_044288 [Vitis vinifera] 106 1e-25
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 102 2e-24
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 87 5e-22
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera] 88 1e-21
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 108 2e-21
>emb|CAN60751.1| hypothetical protein VITISV_044288 [Vitis vinifera]
Length = 633
Score = 106 bits (265), Expect(2) = 1e-25
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 10/148 (6%)
Frame = +2
Query: 155 EDCIYKCTRCKKLNHMQKNYYFQNRNQANYSENNNSQDKLFYSCMNTQ*ESHDVWYLDSG 334
+ I + + KK +H Q N F+N QA+ +E + + +FY+C N + ++VW+LDSG
Sbjct: 7 DSTIEESSLTKKAHHSQ-NCRFKNNQQASCAEEKEADENMFYACQNAVEQKNNVWFLDSG 65
Query: 335 CNNHMTGDKNCFVSLDEKVTSQ----------FN*RLVMEICRMLKSRSIPDVLYVRGLT 484
NHMTG+KN F+ +D + SQ + + I + ++ I DVL + L
Sbjct: 66 YTNHMTGNKNIFLDMDTNINSQVKMGHGDLVNVKGKGTIVIQTKVGTKYIRDVLLIPALE 125
Query: 485 QNLLSGGQLLQKGYTVNFDDNECKVFDK 568
QNLLS GQL++ GY ++F+DNEC ++DK
Sbjct: 126 QNLLSVGQLVEHGYKLHFEDNECTIYDK 153
Score = 36.2 bits (82), Expect(2) = 1e-25
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 579 LVAKVKISSSKVFPLNMPSVESYALEVDKIDESVLWH*R 695
LV K+K+ ++ FP+ VE+ AL ++ ++E+ LWH R
Sbjct: 159 LVKKIKMEKNRSFPIVFKYVENVALRMEDVEEAWLWHRR 197
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 102 bits (254), Expect(2) = 2e-24
Identities = 54/141 (38%), Positives = 85/141 (60%), Gaps = 10/141 (7%)
Frame = +2
Query: 176 TRCKKLNHMQKNYYFQNRNQANYSENNNSQDKLFYSCMNTQ*ESHDVWYLDSGCNNHMTG 355
T+ L Q+ + F+N QA+ +E + + +FY+C + + ++VW+LDSGC NHMTG
Sbjct: 373 TKDLSLLSAQELFGFKNNQQASCAEEKEADENMFYACQSVAEQKNNVWFLDSGCTNHMTG 432
Query: 356 DKNCFVSLDEKVTSQF---N*RLV-------MEICRMLKSRSIPDVLYVRGLTQNLLSGG 505
+KN F+ +D + SQ N LV + I + ++ I DVL V L Q LLS G
Sbjct: 433 NKNIFLDMDTTINSQVKMGNGDLVNVKGKGTVGIQXKVGTKYIRDVLLVPALEQXLLSVG 492
Query: 506 QLLQKGYTVNFDDNECKVFDK 568
QL++ GY ++F++NEC ++DK
Sbjct: 493 QLVEHGYKLHFENNECTIYDK 513
Score = 36.2 bits (82), Expect(2) = 2e-24
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 579 LVAKVKISSSKVFPLNMPSVESYALEVDKIDESVLWH*R 695
LV K+K+ ++ FP+ VE+ AL ++ ++E+ LWH R
Sbjct: 519 LVKKIKMEKNRSFPIVFKYVENVALRMEDVEEAWLWHRR 557
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 87.4 bits (215), Expect(2) = 5e-22
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Frame = +2
Query: 170 KCTRCKKLNHMQKNYYFQNRN--QANYSENNNSQDKLFYSCMNTQ*ESHDVWYLDSGCNN 343
+C CK+ H+Q + + R QANY E Q KLF S+++W+LDSGC+N
Sbjct: 255 QCYYCKRFGHVQXECWKKERQEKQANYVEQEEDQVKLFMXYNEEVVSSNNIWFLDSGCSN 314
Query: 344 HMTGDKNCFVSLDE----KVTSQFN*RLVMEICRML-------KSRSIPDVLYVRGLTQN 490
HMTG K+ F LDE KV + ++ +E ++ + + +V ++ LTQN
Sbjct: 315 HMTGIKSLFKELDESHKLKVKLGDDKQVXVEGKGIMAVNNGHGNVKLLYNVYFIPSLTQN 374
Query: 491 LLSGGQLLQKGYTVNFDDNECKVFDKR 571
LLS GQL+ GY++ FD C + DK+
Sbjct: 375 LLSVGQLMVSGYSILFDGATCVIKDKK 401
Score = 43.1 bits (100), Expect(2) = 5e-22
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +3
Query: 567 KDTQLVAKVKISSSKVFPLNMPSVESYALEVDKIDESVLWH*R 695
K Q++ V+++++K+FPL + S+E +AL V + ES LWH R
Sbjct: 401 KSDQIIVNVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLR 443
>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
Length = 1109
Score = 87.8 bits (216), Expect(2) = 1e-21
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 13/147 (8%)
Frame = +2
Query: 170 KCTRCKKLNHMQKNYYFQNRN--QANYSENNNSQDKLFYSCMNTQ*ESHDVWYLDSGCNN 343
+C CK+ H+Q + + R QANY E Q KLF + S+++W+LDSGC+N
Sbjct: 241 QCYYCKRFGHVQAECWKKERQEKQANYVEQEEDQVKLFMAYNEEVVXSNNIWFLDSGCSN 300
Query: 344 HMTGDKNCFVSLDE----KVTSQFN*RLVMEICRML-------KSRSIPDVLYVRGLTQN 490
HMTG K+ F LDE KV + ++ +E + + + +V ++ LTQN
Sbjct: 301 HMTGIKSLFKELDESHKLKVKLGDDKQVXVEGKGTVAVNNGHGNVKLLYNVYFIPSLTQN 360
Query: 491 LLSGGQLLQKGYTVNFDDNECKVFDKR 571
LLS GQL+ GY++ FD + C + DK+
Sbjct: 361 LLSVGQLMVSGYSILFDGSTCVIKDKK 387
Score = 41.6 bits (96), Expect(2) = 1e-21
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +3
Query: 567 KDTQLVAKVKISSSKVFPLNMPSVESYALEVDKIDESVLWH*R 695
K Q++ V+++++K+FPL + S+E +AL V + ES LWH R
Sbjct: 387 KFDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLR 429
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 108 bits (269), Expect = 2e-21
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Frame = +2
Query: 110 SSPYCNVCKKVGRASEDCIYK--CTRCKKLNHMQKNYYFQNRNQANYSENNNSQDKLFYS 283
S+ +C++C+K ++ C K C +CK+ H+ K + N+AN+S+ +++ +S
Sbjct: 255 SNLWCDICQKSSHTTDMCWKKMTCNKCKRKGHIAKYCRTREINRANFSQEKEKSEEMVFS 314
Query: 284 CMNTQ*ESHDVWYLDSGCNNHMTGDKNCFVSLDEKV----------TSQFN*RLVMEICR 433
C Q E DVW +DSGC NHM D N F +D +Q + + +
Sbjct: 315 CHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQT 374
Query: 434 MLKSRSIPDVLYVRGLTQNLLSGGQLLQKGYTVNFDDNECKVFDKRH 574
+ I DVL V L QNLLS GQLL+ GY V F+D CK+ D+++
Sbjct: 375 ADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKN 421