BLASTX nr result

ID: Coptis25_contig00012493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012493
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308172.1| predicted protein [Populus trichocarpa] gi|2...    63   2e-08
ref|XP_002303192.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002332446.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07

>ref|XP_002308172.1| predicted protein [Populus trichocarpa] gi|222854148|gb|EEE91695.1|
           predicted protein [Populus trichocarpa]
          Length = 670

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +1

Query: 19  GDSWVCPVSVTMLLASWDLRVHYKKGR*LWSMLAFAIMWGIWLERNQKHFEGATTPMEKV 198
           G +W CP ++  L + WD  V+ K  +  W ML F++ W +WL RN   F+ +T   + +
Sbjct: 417 GLAWCCPKNLAALFSQWDSLVYGKFQKKAWLMLLFSVAWSLWLHRNDVIFKQSTPNYDTL 476

Query: 199 VLAIKTLLCFWSK 237
            + I T LCFW K
Sbjct: 477 FILIITRLCFWIK 489


>ref|XP_002303192.1| predicted protein [Populus trichocarpa] gi|222840624|gb|EEE78171.1|
           predicted protein [Populus trichocarpa]
          Length = 677

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 38/73 (52%)
 Frame = +1

Query: 19  GDSWVCPVSVTMLLASWDLRVHYKKGR*LWSMLAFAIMWGIWLERNQKHFEGATTPMEKV 198
           G SW CP +++ L + W   VH K  +  W ML F++ W +WL RN   F+  +   + V
Sbjct: 484 GLSWCCPKNLSGLFSQWTFMVHGKFQKKAWLMLFFSVAWSLWLLRNDLIFQQKSPNYDSV 543

Query: 199 VLAIKTLLCFWSK 237
              I T LC W K
Sbjct: 544 FFLIITRLCLWLK 556


>ref|XP_002332446.1| predicted protein [Populus trichocarpa] gi|222833062|gb|EEE71539.1|
           predicted protein [Populus trichocarpa]
          Length = 242

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 38/73 (52%)
 Frame = +1

Query: 19  GDSWVCPVSVTMLLASWDLRVHYKKGR*LWSMLAFAIMWGIWLERNQKHFEGATTPMEKV 198
           G SW CP +++ L + W   VH K  +  W ML F++ W +WL RN   F+  +   + V
Sbjct: 58  GLSWCCPKNLSGLFSQWTFMVHGKFQKKAWLMLFFSVAWSLWLLRNDLIFQQKSPNYDSV 117

Query: 199 VLAIKTLLCFWSK 237
              I T LC W K
Sbjct: 118 FFLIITRLCLWLK 130


Top