BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012446
         (1449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   129   2e-59
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   124   2e-54
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               114   5e-54
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   117   2e-53
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    95   2e-49

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  129 bits (325), Expect(3) = 2e-59
 Identities = 62/164 (37%), Positives = 100/164 (60%)
 Frame = +1

Query: 1    YLFVLIMEILGGLLKQVVARKNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAV 180
            YL+V+ M +L  +L +    K I+YH +CR + +THL FADD+++   G + S++   A+
Sbjct: 812  YLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAI 871

Query: 181  MQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYK 360
             + F  +  LK+++ K+++    +SP A   +      +L + P+KYLGLPL   R+   
Sbjct: 872  FEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQS 931

Query: 361  DCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSSFHHIGLKL 492
            D LPL+E+I  R+  W N+ LS AGRLQLI+S+LSS  +  L +
Sbjct: 932  DYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSV 975



 Score = 77.8 bits (190), Expect(3) = 2e-59
 Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 7/197 (3%)
 Frame = +1

Query: 790  IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCE--SMXXXXXXXXXXXXXXXDDARVA 963
            +WR ILK R  A  F +  + +   TS WH+ WC    +               ++A VA
Sbjct: 1076 LWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVA 1135

Query: 964  ELITNGQWNGKIHSLPDF--EVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXX---YM 1128
            E++   +   +     DF  ++K  I           D  +W                + 
Sbjct: 1136 EVMNTHR---RKRHRADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQ 1192

Query: 1129 NLRRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHR 1308
             +R I  +  WY+ VW     PK+SF+ W  F   L+T D++ K N   +  C  C    
Sbjct: 1193 QIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEEL 1252

Query: 1309 ENLSHLFFDCPFSKEVW 1359
            E   HLFF CP+S  VW
Sbjct: 1253 ETRDHLFFSCPYSSHVW 1269



 Score = 70.9 bits (172), Expect(3) = 2e-59
 Identities = 30/100 (30%), Positives = 60/100 (60%)
 Frame = +3

Query: 468  ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 647
            I+++W   F LP   +++I ++ + FLW+GP++N    K +   +   K EGGL +   K
Sbjct: 968  ITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLK 1027

Query: 648  TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 767
              N  S   LI++++   ++LW KW+ ++ +R ++FW+++
Sbjct: 1028 EANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVK 1067


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  124 bits (312), Expect(3) = 2e-54
 Identities = 60/156 (38%), Positives = 96/156 (61%)
 Frame = +1

Query: 1    YLFVLIMEILGGLLKQVVARKNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAV 180
            YLFV+ M++L  +L +  A ++  YH KC+ + +THL FADD+++L  G+  S+ER+  V
Sbjct: 665  YLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKV 724

Query: 181  MQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYK 360
               F +  GL++++ K+++    LS  A  ++A          P++YLGLPL   R+   
Sbjct: 725  FDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTT 784

Query: 361  DCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSS 468
            DCLPL+E++  R+  W ++ LS AGRL LI S+L S
Sbjct: 785  DCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWS 820



 Score = 68.6 bits (166), Expect(3) = 2e-54
 Identities = 32/100 (32%), Positives = 53/100 (53%)
 Frame = +3

Query: 468  ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 647
            I ++W   F LP   ++++ ++ + FLW+G  MN    K S   +   K EGGL +   K
Sbjct: 821  ICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLK 880

Query: 648  TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 767
              N      L++K+V    +LW KW+ ++ LR  SFW ++
Sbjct: 881  EANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920



 Score = 68.2 bits (165), Expect(3) = 2e-54
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 7/204 (3%)
 Frame = +1

Query: 790  IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCESMXXXXXXXXXXXXXXXDDARVAEL 969
            IW+ +LK+R+ A    K  + N K+TS W++ W +                 D      +
Sbjct: 929  IWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSD---LGQLLERTGDRGLIDLGISRRM 985

Query: 970  ITNGQWNGKIHSLPDFEVKRLILGIEIQS----LMKEDFVVW---XXXXXXXXXXXXXYM 1128
                 W  +       +V  +I     +S       ED V+W                + 
Sbjct: 986  TVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWH 1045

Query: 1129 NLRRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHR 1308
            + R    +V W+K++W     PK+SF  W    G L T DR+I       + C  C+   
Sbjct: 1046 HTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTL 1105

Query: 1309 ENLSHLFFDCPFSKEVWSNFKRHV 1380
            E   HLFF C F+  +W +  R +
Sbjct: 1106 ETRDHLFFTCSFTSVIWVDLARGI 1129


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  114 bits (285), Expect(3) = 5e-54
 Identities = 56/156 (35%), Positives = 92/156 (58%)
 Frame = +1

Query: 1   YLFVLIMEILGGLLKQVVARKNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAV 180
           YLFV+ M++L  +L +    +   +H KC+R+ +THL FADD+++L  G+  S+E +  V
Sbjct: 312 YLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEV 371

Query: 181 MQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYK 360
              F +  GL++++ K++L    +SP    ++A      +   P++YLGLPL   R+   
Sbjct: 372 FDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSA 431

Query: 361 DCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSS 468
           D  PL+E+I  R+A W  +  S AGR  LI+S+L S
Sbjct: 432 DYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWS 467



 Score = 75.5 bits (184), Expect(3) = 5e-54
 Identities = 34/100 (34%), Positives = 57/100 (57%)
 Frame = +3

Query: 468 ISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTK 647
           I ++W   F LP   +++I +L + FLW+G  M+    K S   +   K EGGL + + K
Sbjct: 468 ICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLK 527

Query: 648 TWNIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTMR 767
             N  S   L+++++    +LWTKW+ EY +R KS W+++
Sbjct: 528 EANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLK 567



 Score = 70.5 bits (171), Expect(3) = 5e-54
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 7/198 (3%)
 Frame = +1

Query: 790  IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCES--MXXXXXXXXXXXXXXXDDARVA 963
            IWR ILK R  A  F +  + N +  S W++ W     +                +A VA
Sbjct: 576  IWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVA 635

Query: 964  ELITNGQWNGKIHSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXX---YMNL 1134
            +  T         SL + E++ ++    I     ED V+W                +  +
Sbjct: 636  DAWTRRSRRRHRTSLLN-EIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLI 694

Query: 1135 RRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQ--SLCCLCRNHR 1308
            +   + V W+K VW +   PK++   W      L T DR++K N        C LC N+ 
Sbjct: 695  KATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNS 754

Query: 1309 ENLSHLFFDCPFSKEVWS 1362
            + L HLFF C ++  VW+
Sbjct: 755  KTLEHLFFSCSYASTVWA 772


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  117 bits (292), Expect(3) = 2e-53
 Identities = 61/156 (39%), Positives = 91/156 (58%)
 Frame = +1

Query: 1   YLFVLIMEILGGLLKQVVARKNINYHSKCRRVEVTHLRFADDVLLLCKGEASSMERVKAV 180
           YLFV+ ME+L  +L Q    K   +H KC+ + +THL FADD+++L  G+  S++ +  V
Sbjct: 70  YLFVISMEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEV 129

Query: 181 MQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAARIGYK 360
           M  F +  GL++N+ KT+L T  +S      +       L   P++YLGLPL   R+  +
Sbjct: 130 MNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKE 189

Query: 361 DCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSS 468
           D  PL E+I  R+  W ++ LS AGRL LI S+L S
Sbjct: 190 DLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWS 225



 Score = 71.2 bits (173), Expect(3) = 2e-53
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 6/203 (2%)
 Frame = +1

Query: 790  IWRSILKHRKTAVRFIKYVIVNRKETSLWHEPWCES--MXXXXXXXXXXXXXXXDDARVA 963
            +W+ +LK+R+TA  F +  + N   TS W + W     +                +  VA
Sbjct: 334  MWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVA 393

Query: 964  ELITNGQWNG-KIHSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXX---YMN 1131
            E  +N +    +   L D E   L    + ++L++ED  +W                +  
Sbjct: 394  EAWSNRRRRKHRTEQLNDIEAA-LNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQ 452

Query: 1132 LRRIRNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHRE 1311
            +R+  N+V WYK VW     PK+ F  W      LST  R+   N      C  C    E
Sbjct: 453  VRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIE 512

Query: 1312 NLSHLFFDCPFSKEVWSNFKRHV 1380
               HLFF C ++  +W+   ++V
Sbjct: 513  TRDHLFFSCSYASAIWTAIAKNV 535



 Score = 70.5 bits (171), Expect(3) = 2e-53
 Identities = 31/97 (31%), Positives = 54/97 (55%)
 Frame = +3

Query: 474 SYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNIIDTKTW 653
           ++W   F LP   +K+I+ + + FLW+GP +++   K S   +   K EGGL +      
Sbjct: 228 NFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEA 287

Query: 654 NIASYCGLIYKVVKKEETLWTKWIWEYQLRGKSFWTM 764
           N+ S   LI++V   +++LW KW     L+ +SFW++
Sbjct: 288 NVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score = 94.7 bits (234), Expect(3) = 2e-49
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 3/192 (1%)
 Frame = +1

Query: 793  WRSILKHRKTAVRFIKYVIVNRKETSLWHEPWC--ESMXXXXXXXXXXXXXXXDDARVAE 966
            W  ILK R  A   +KY+I +   TSLW + W     +                +A+V  
Sbjct: 217  WGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNV 276

Query: 967  LITNGQWNGKI-HSLPDFEVKRLILGIEIQSLMKEDFVVWXXXXXXXXXXXXXYMNLRRI 1143
            LI N +W      ++    +   I       + ++D +VW             +  LRR 
Sbjct: 277  LIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRH 336

Query: 1144 RNKVKWYKLVWGKLVVPKHSFIVWQLFSGCLSTQDRLIKKNILHQSLCCLCRNHRENLSH 1323
            R  V+W+ +VW K  VP+HSF++W      L+TQD+L +  I   + C LC  + E+ +H
Sbjct: 337  RQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNH 396

Query: 1324 LFFDCPFSKEVW 1359
            LFF+C ++K +W
Sbjct: 397  LFFECSYTKAIW 408



 Score = 83.2 bits (204), Expect(3) = 2e-49
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = +3

Query: 459 LVLISSYWTKTFILPDGVVKKISQLTNRFLWAGPNMNKCLHKASHGTLRFSKMEGGLNII 638
           L  I  YW   F+LP  V+K + Q+   FLW+G +M     K +   +   K EGGL I 
Sbjct: 105 LFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIK 164

Query: 639 DTKTWNIASYCGLIYKVVKKEE-TLWTKWIWEYQLRGKSFWTMRIPFDCSW 788
             K WN  +    I+ +    + ++W+ WI    LRG++FWT++ P +CSW
Sbjct: 165 SIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSW 215



 Score = 67.0 bits (162), Expect(3) = 2e-49
 Identities = 36/100 (36%), Positives = 58/100 (58%)
 Frame = +1

Query: 169 VKAVMQSFFELIGLKLNVNKTSLLTGSLSPAASMDLAGILGVKLVSPPIKYLGLPLTAAR 348
           ++ V+  F +L GL  N NK+ +    +  A    +  ILG +    P+KYLG+PL ++R
Sbjct: 8   IRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSR 67

Query: 349 IGYKDCLPLIEEISIRMADWKNKTLSLAGRLQLIQSILSS 468
           +    C  L++ I+ ++  W  +TLS AGR+QLI S+L S
Sbjct: 68  LKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFS 107