BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012434
         (2067 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...   180   4e-62
emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]   196   5e-60
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   182   5e-60
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         177   2e-59
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   178   4e-59

>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score =  180 bits (456), Expect(2) = 4e-62
 Identities = 86/185 (46%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
 Frame = -2

Query: 2054 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1875
            RL F  S  V+  P   +H D+WGPSPV SV  ++YY+  +D+YSR+ W YP+ + SD +
Sbjct: 506  RLPFSASQFVATRPLERIHCDVWGPSPVVSVQEFKYYVVLIDNYSRYCWMYPMKKKSDFH 565

Query: 1874 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1695
              F+  +++V+N F   I  FQ DGGGE+  + F L L+++GI    SCPHTP QNG+AE
Sbjct: 566  SIFIAFQSLVQNQFHTTIGTFQCDGGGEFISNQFLLHLQKNGIQQLLSCPHTPQQNGLAE 625

Query: 1694 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLP-SKTLSNKSPFEVIYGGLHVF 1518
            R+HRHIVE GL+LLF S  P+  W++AFMTA FL N LP S   +  SP+E ++     +
Sbjct: 626  RRHRHIVELGLSLLFQSRAPQKYWVEAFMTANFLSNLLPHSANTNTASPYEKLHNKSPSY 685

Query: 1517 AGLRL 1503
              LR+
Sbjct: 686  DALRI 690



 Score = 87.0 bits (214), Expect(2) = 4e-62
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
 Frame = -3

Query: 1528 YTFLRVFGCACYPVL--FTSKV*SKICPMCVFLGYSSQHKGYRCLDPSSGGVYISRNVVF 1355
            Y  LR+FGCAC+P+L  +T          CVFLGYS ++KGYRCL P++G VYISR+V+F
Sbjct: 685  YDALRIFGCACFPMLRPYTQNKLDPRSLQCVFLGYSEKYKGYRCLLPATGRVYISRHVIF 744

Query: 1354 DESLFPFAD 1328
            DES FPFAD
Sbjct: 745  DESKFPFAD 753



 Score = 77.4 bits (189), Expect(3) = 3e-23
 Identities = 34/67 (50%), Positives = 46/67 (68%)
 Frame = -2

Query: 434  GEDFDDTFSPVVKPTTIRTILAVAVTRSWPIRQLDVKNAFLQGTLSETLFMRQPPGFQDP 255
            G D+ +T+SPVV+  T+R +L +A    W I+Q+DV NAFL G L ET++M QP GF D 
Sbjct: 967  GIDYLETYSPVVRTATVRIVLHIATVLQWDIKQMDVANAFLHGDLHETVYMSQPKGFVDE 1026

Query: 254  RFPNHVC 234
              P+HVC
Sbjct: 1027 SKPDHVC 1033



 Score = 51.6 bits (122), Expect(3) = 3e-23
 Identities = 23/59 (38%), Positives = 37/59 (62%)
 Frame = -3

Query: 637  EAVKHPHRRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 461
            EA+KHP    +M +E+       TWSL+P +P M++IG  WVF+ K  +DG++   ++R
Sbjct: 898  EALKHPGWNNSMKEEIGNCELTKTWSLVPYTPDMHVIGNGWVFREKLNADGTVKSLRSR 956



 Score = 28.1 bits (61), Expect(3) = 3e-23
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 147  FSNFLLQSGFRCSWADSSMFIRR 79
            FS +L++ GF CS  D S+FI R
Sbjct: 1053 FSTYLIEFGFVCSIKDPSLFIYR 1075


>emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]
          Length = 1501

 Score =  196 bits (498), Expect(2) = 5e-60
 Identities = 90/174 (51%), Positives = 119/174 (68%)
 Frame = -2

Query: 2054 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1875
            RL + R+   S     L+H D+WGPSP+ S +G+ YY+ F+DDYSRFTW YPL   SD +
Sbjct: 451  RLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFF 510

Query: 1874 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1695
              F++ +  VEN    +I  FQSDGG E+  + F+  L  SGI H+ SCP+TP QNG AE
Sbjct: 511  DIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAE 570

Query: 1694 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIYG 1533
            RKHRH+ E+GLALLFHS+     W+DAF TA +++NRLP+  L  KSPFE++YG
Sbjct: 571  RKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYG 624



 Score = 63.9 bits (154), Expect(2) = 5e-60
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
 Frame = -3

Query: 1528 YTFLRVFGCACYPVLFTSKV*SKICPM---CVFLGYSSQHKGYRCLDPSSGGVYISRNVV 1358
            Y     FGC  YP L    + +K+ P    C+FLGYS  HKG+RCLDP++  +YI+R+  
Sbjct: 629  YENFHPFGCRVYPCL-RDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQ 687

Query: 1357 FDESLFP 1337
            FDE+ FP
Sbjct: 688  FDETHFP 694



 Score =  106 bits (265), Expect(3) = 3e-39
 Identities = 46/67 (68%), Positives = 56/67 (83%)
 Frame = -2

Query: 434  GEDFDDTFSPVVKPTTIRTILAVAVTRSWPIRQLDVKNAFLQGTLSETLFMRQPPGFQDP 255
            G D+ DTFSPVVK TT+R +L++AVT  WP+RQLDVKNAFL GTL+E ++M QPPG+ DP
Sbjct: 898  GLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDP 957

Query: 254  RFPNHVC 234
            RFP HVC
Sbjct: 958  RFPTHVC 964



 Score = 73.2 bits (178), Expect(3) = 3e-39
 Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
 Frame = -3

Query: 808  HRASQPSVLSRHPTITRSMDG---TRRP-KLFLCTRNPLPSAHLSHVADDAHR*PSFFFY 641
            H A   S L  HP ITR+  G   TR P  L +   + L  A L+              +
Sbjct: 776  HAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLXALLASTEPKG--------F 827

Query: 640  TEAVKHPHRRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 461
              A K+P   AAMD+E+ AL +NGTW L+P   + NI+G KWVF+ K   DGS+ R KAR
Sbjct: 828  KSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKAR 887



 Score = 31.2 bits (69), Expect(3) = 3e-39
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 147  FSNFLLQSGFRCSWADSSMFI 85
            FS+FLL  GF CS AD+S+F+
Sbjct: 984  FSSFLLTLGFSCSRADTSLFV 1004


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  182 bits (462), Expect(2) = 5e-60
 Identities = 87/184 (47%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
 Frame = -2

Query: 2054 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1875
            RL F  S  ++  P   VH D+WGP+PV S+ G++YY+ F+D+ SRF W YPL   SD  
Sbjct: 490  RLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFC 549

Query: 1874 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1695
              F+K ++ VEN+   +I  FQSDGGGE+  + F   L++SGI H  SCPHTP QNG+AE
Sbjct: 550  SLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQNGLAE 609

Query: 1694 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTL-SNKSPFEVIYGGLHVF 1518
            RKHR + E GL L+F S  P+  W++AF TA FL N LP+  L S+ +P++V++G    +
Sbjct: 610  RKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSALDSSTTPYQVLFGKAPDY 669

Query: 1517 AGLR 1506
            + LR
Sbjct: 670  SALR 673



 Score = 77.8 bits (190), Expect(2) = 5e-60
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
 Frame = -3

Query: 1531 DYTFLRVFGCACYPVLFTSKV*SKICPM---CVFLGYSSQHKGYRCLDPSSGGVYISRNV 1361
            DY+ LR FGCAC+P L  +   +K  P    C+FLGY+ ++KGYRC  P +  VY+SR+V
Sbjct: 668  DYSALRTFGCACFPTL-RAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRVYLSRHV 726

Query: 1360 VFDESLFPFAD 1328
            +FDES FPF D
Sbjct: 727  LFDESSFPFID 737



 Score = 78.6 bits (192), Expect(3) = 3e-15
 Identities = 32/67 (47%), Positives = 49/67 (73%)
 Frame = -2

Query: 434  GEDFDDTFSPVVKPTTIRTILAVAVTRSWPIRQLDVKNAFLQGTLSETLFMRQPPGFQDP 255
            G D+ +T+SPVV+  T+R +L ++   +W ++Q+DVKN FL G L+ET++M+QP GF D 
Sbjct: 928  GIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFLHGDLTETVYMKQPAGFIDK 987

Query: 254  RFPNHVC 234
              P+HVC
Sbjct: 988  AHPDHVC 994



 Score = 29.3 bits (64), Expect(3) = 3e-15
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 147  FSNFLLQSGFRCSWADSSMFI 85
            FS FLL  GF CS +D S+F+
Sbjct: 1014 FSKFLLSFGFVCSMSDPSLFV 1034



 Score = 21.6 bits (44), Expect(3) = 3e-15
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 508 KVKEKSDGSIFRYKAR 461
           +VK   DGS+ +YKAR
Sbjct: 902 RVKLNVDGSLDKYKAR 917


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  177 bits (448), Expect(2) = 2e-59
 Identities = 85/173 (49%), Positives = 112/173 (64%)
 Frame = -2

Query: 2054 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1875
            RL F  S   +  P   VH D+WGPSPV S  G++YY  FVDD+SRF+W +PL   S   
Sbjct: 500  RLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFI 559

Query: 1874 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1695
              F+  + +VEN  G +I  FQSDGGGE+  +  +    + GI HR SCP+TP QNGVAE
Sbjct: 560  SVFIAYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAE 619

Query: 1694 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIY 1536
            RKHRH+VE GL++L+HS+ P   W++AF TA +L N LPS  L   SP+E ++
Sbjct: 620  RKHRHLVELGLSMLYHSHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLF 672



 Score = 81.3 bits (199), Expect(2) = 2e-59
 Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
 Frame = -3

Query: 1531 DYTFLRVFGCACYPVLFTSKV*SKICP---MCVFLGYSSQHKGYRCLDPSSGGVYISRNV 1361
            DYT LRVFG ACYP L      +K  P    CVFLGY +Q+KGYRCL P +G VYISR+V
Sbjct: 677  DYTPLRVFGTACYPCL-RPLAKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHV 735

Query: 1360 VFDESLFPFAD 1328
            +FDE+ FPF +
Sbjct: 736  IFDEAQFPFKE 746



 Score = 86.3 bits (212), Expect(3) = 7e-34
 Identities = 39/67 (58%), Positives = 46/67 (68%)
 Frame = -2

Query: 434  GEDFDDTFSPVVKPTTIRTILAVAVTRSWPIRQLDVKNAFLQGTLSETLFMRQPPGFQDP 255
            G D+ +TFSPVV+  TIR +L  A    WP++QLDV NAFL G L E +FM QP GF DP
Sbjct: 952  GVDYLETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDP 1011

Query: 254  RFPNHVC 234
              PNHVC
Sbjct: 1012 NKPNHVC 1018



 Score = 74.3 bits (181), Expect(3) = 7e-34
 Identities = 45/112 (40%), Positives = 64/112 (57%)
 Frame = -3

Query: 796  QPSVLSRHPTITRSMDGTRRPKLFLCTRNPLPSAHLSHVADDAHR*PSFFFYTEAVKHPH 617
            Q S+ + HP ITRS DG ++P       NP  +  +S  + D  +       T A+KHP 
Sbjct: 842  QGSLENLHPMITRSKDGIQKP-------NPRYALIVSKSSFDEPK-----TITTAMKHPS 889

Query: 616  RRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKAR 461
              AA+ DE++ +    TWSL+P++  MNI+  KWVFK K K DG+I + KAR
Sbjct: 890  WNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLKAR 941



 Score = 32.3 bits (72), Expect(3) = 7e-34
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 147  FSNFLLQSGFRCSWADSSMFI 85
            FSNFLL  GF CS +D S+F+
Sbjct: 1038 FSNFLLDFGFECSTSDPSLFV 1058


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  178 bits (452), Expect(2) = 4e-59
 Identities = 87/182 (47%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
 Frame = -2

Query: 2054 RLAFGRSARVSPSPFYLVHSDIWGPSPVPSVTGYRYYISFVDDYSRFTWKYPLAR*SDAY 1875
            +L F      +  P  L+H+D+WGP  +PS TG RY+I FVDD+SRF+W YPL     A 
Sbjct: 563  KLPFNVXVSRASHPLALLHADLWGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQAL 622

Query: 1874 GCFVKLKAMVENVFGCQISYFQSDGGGEYRYSPFELLLEQSGITHRFSCPHTPPQNGVAE 1695
              F+K K++VEN F  +I   +SD GGE++   F   L   GI  +FSCP+TP QNG AE
Sbjct: 623  SVFIKFKSLVENQFNSRIQCLRSDNGGEFK--AFSSYLATHGIKSQFSCPYTPEQNGRAE 680

Query: 1694 RKHRHIVESGLALLFHSNCPEYLWMDAFMTAVFLMNRLPSKTLSNKSPFEVIYG---GLH 1524
            RK RHI+E+GLALL  ++ P   W+ AF TA+FL+NRLP+K L+ +SPF++++G     H
Sbjct: 681  RKLRHIIETGLALLATASLPFKFWLYAFHTAIFLINRLPTKVLNYQSPFQILFGKSPNYH 740

Query: 1523 VF 1518
            +F
Sbjct: 741  IF 742



 Score = 78.6 bits (192), Expect(2) = 4e-59
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = -3

Query: 1531 DYTFLRVFGCACYPVL--FTSKV*SKICPMCVFLGYSSQHKGYRCLDPSSGGVYISRNVV 1358
            +Y   ++FGC CYP +  +     S     CVFLGYSS HKGY CL+P +G +Y++R+VV
Sbjct: 738  NYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVV 797

Query: 1357 FDESLFPFADGKPL*SYSRKGLLITI-SPTFIAFGLTPGSLLMLH 1226
            F E++FPF       +  +   ++TI +P F+     P S L  H
Sbjct: 798  FHETVFPFQS-----TPDQSSSVVTIPTPAFLPCSSPPVSSLRSH 837



 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 50/137 (36%), Positives = 79/137 (57%)
 Frame = -3

Query: 799  SQPSVLSRHPTITRSMDGTRRPKLFLCTRNPLPSAHLSHVADDAHR*PSFFFYTEAVKHP 620
            S+P   ++HP +TR+ +G  + K++        S+H+S         P+ F  T+AVK  
Sbjct: 871  SEPHPTNQHPMVTRAKNGISKKKVYF-------SSHISE--------PTTF--TQAVKDS 913

Query: 619  HRRAAMDDELNALLKNGTWSLLPSSPSMNIIGCKWVFKVKEKSDGSIFRYKARSEGLSSA 440
            +   AM+ E +AL +N TW L+P   + NIIGCKWV+K+K K DG++ RYKAR   L + 
Sbjct: 914  NWVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKAR---LVAQ 970

Query: 439  RLERTLMIHLAQS*SPL 389
               +TL +   ++ SP+
Sbjct: 971  GFTQTLGLDYFETFSPV 987