BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012397
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20322.3| unnamed protein product [Vitis vinifera]              101   5e-20
ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containi...   101   5e-20
ref|XP_002519054.1| pentatricopeptide repeat-containing protein,...    95   5e-18
ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
emb|CBI33242.3| unnamed protein product [Vitis vinifera]               94   1e-17

>emb|CBI20322.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  101 bits (252), Expect = 5e-20
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = +3

Query: 60  NISSTLESNIKPFENFVTISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGK 239
           ++S TL SN+         S RSVYTG+F   NLYS++SPLG P ++L P LD+WVEEGK
Sbjct: 14  HVSQTLISNV--------CSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGK 65

Query: 240 HIRFVELKRIIQDFRKRRRFTQALQVSEWM 329
            +R VEL RII+D R R+R+ QAL+VSEWM
Sbjct: 66  KVRDVELHRIIRDLRSRKRYAQALEVSEWM 95


>ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial [Vitis vinifera]
          Length = 504

 Score =  101 bits (252), Expect = 5e-20
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = +3

Query: 60  NISSTLESNIKPFENFVTISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGK 239
           ++S TL SN+         S RSVYTG+F   NLYS++SPLG P ++L P LD+WVEEGK
Sbjct: 14  HVSQTLISNV--------CSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGK 65

Query: 240 HIRFVELKRIIQDFRKRRRFTQALQVSEWM 329
            +R VEL RII+D R R+R+ QAL+VSEWM
Sbjct: 66  KVRDVELHRIIRDLRSRKRYAQALEVSEWM 95


>ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541717|gb|EEF43265.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 485

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 44/72 (61%), Positives = 54/72 (75%)
 Frame = +3

Query: 120 SRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRRRF 299
           SR  Y  + +K  LYSK+SPLGDP  +L PELD WV++G  +R  EL+RII+D RKR RF
Sbjct: 3   SRYYYANRTKKVTLYSKISPLGDPNTSLVPELDNWVQDGNKVRVGELQRIIRDLRKRNRF 62

Query: 300 TQALQVSEWMEK 335
           TQAL+VSEWM K
Sbjct: 63  TQALEVSEWMNK 74


>ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Vitis vinifera]
          Length = 506

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 41/74 (55%), Positives = 57/74 (77%)
 Frame = +3

Query: 114 ISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRR 293
           IS+R+ YT ++ K +LY+K+SPLGDP  ++ PELD WV+ G  +   EL+RII D RKR+
Sbjct: 26  ISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRK 85

Query: 294 RFTQALQVSEWMEK 335
           RF+QAL++SEWM K
Sbjct: 86  RFSQALEISEWMSK 99


>emb|CBI33242.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 41/74 (55%), Positives = 57/74 (77%)
 Frame = +3

Query: 114 ISSRSVYTGKFRKKNLYSKLSPLGDPGINLGPELDKWVEEGKHIRFVELKRIIQDFRKRR 293
           IS+R+ YT ++ K +LY+K+SPLGDP  ++ PELD WV+ G  +   EL+RII D RKR+
Sbjct: 26  ISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRKRK 85

Query: 294 RFTQALQVSEWMEK 335
           RF+QAL++SEWM K
Sbjct: 86  RFSQALEISEWMSK 99