BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012341
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   166   1e-39
emb|CBI15839.3| unnamed protein product [Vitis vinifera]              166   1e-39
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  166 bits (421), Expect = 1e-39
 Identities = 73/107 (68%), Positives = 95/107 (88%)
 Frame = -1

Query: 323 LKVDVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFV 144
           LK+DV LGNAL+DMYCKCG+LE+A+DVFH +S KN+FCW+S+IVGLGM+G G++AI AF+
Sbjct: 236 LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFI 295

Query: 143 EMQKEGIKPDRVAFIGLLSGCSHSGLVYEGGQYFSQMDGVYGIKPGI 3
            M+KEGIKPD V F+G+LSGCSHSGL+  G +YFS+M GVYG++PG+
Sbjct: 296 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGV 342



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = -1

Query: 314 DVYLGNALVDMYCKCGSLESALDVFHRV-SVKNVFCWSSLIVGLGMHGYGKQAIDAFVEM 138
           DV   NA++D YCK   L +A ++F  + S +N   W+++I      G    AI  F +M
Sbjct: 137 DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQM 196

Query: 137 QKEGIKPDRVAFIGLLSGCSHSGLVYEG 54
           Q E +KP  V  + LLS C+H G +  G
Sbjct: 197 QSENVKPTEVTMVSLLSACAHLGALDMG 224


>emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  166 bits (421), Expect = 1e-39
 Identities = 73/107 (68%), Positives = 95/107 (88%)
 Frame = -1

Query: 323 LKVDVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFV 144
           LK+DV LGNAL+DMYCKCG+LE+A+DVFH +S KN+FCW+S+IVGLGM+G G++AI AF+
Sbjct: 164 LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFI 223

Query: 143 EMQKEGIKPDRVAFIGLLSGCSHSGLVYEGGQYFSQMDGVYGIKPGI 3
            M+KEGIKPD V F+G+LSGCSHSGL+  G +YFS+M GVYG++PG+
Sbjct: 224 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGV 270



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = -1

Query: 314 DVYLGNALVDMYCKCGSLESALDVFHRVSVKNV--FCWSSLIVGLGMHGYGKQAIDAFVE 141
           D+ L   L+D Y K G +E A ++F  ++ +N     W+++I      G    AI  F +
Sbjct: 64  DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123

Query: 140 MQKEGIKPDRVAFIGLLSGCSHSGLVYEG 54
           MQ E +KP  V  + LLS C+H G +  G
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMG 152


>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  126 bits (316), Expect = 2e-27
 Identities = 56/107 (52%), Positives = 78/107 (72%)
 Frame = -1

Query: 323 LKVDVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFV 144
           +K++ +L  +L+DMYCKCG L+ AL VFH V  K+VF WS++I GL MHG+GK AI  F 
Sbjct: 401 MKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFS 460

Query: 143 EMQKEGIKPDRVAFIGLLSGCSHSGLVYEGGQYFSQMDGVYGIKPGI 3
           +MQ++ +KP+ V F  +L  CSH GLV EG  +F+QM+ VYG+ PG+
Sbjct: 461 KMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGV 507



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/79 (32%), Positives = 47/79 (59%)
 Frame = -1

Query: 314 DVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFVEMQ 135
           DV++ N+L+  Y KCG L     VF  +  ++V  W+S+I      G  ++A++ F EM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 134 KEGIKPDRVAFIGLLSGCS 78
            + +KP+ +  +G+LS C+
Sbjct: 230 TQNVKPNGITMVGVLSACA 248


>ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  124 bits (310), Expect = 1e-26
 Identities = 54/105 (51%), Positives = 78/105 (74%)
 Frame = -1

Query: 323 LKVDVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFV 144
           +++ V LG AL+DMY KCGS+E AL+VFH++  KNV  WS++I GL ++G GK A++ F 
Sbjct: 299 VRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFS 358

Query: 143 EMQKEGIKPDRVAFIGLLSGCSHSGLVYEGGQYFSQMDGVYGIKP 9
           +M+ +G+KP+ V FIG+L+ CSHS LV EG  +F  M  +YG+KP
Sbjct: 359 QMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKP 403


>ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  123 bits (309), Expect = 1e-26
 Identities = 54/104 (51%), Positives = 75/104 (72%)
 Frame = -1

Query: 314 DVYLGNALVDMYCKCGSLESALDVFHRVSVKNVFCWSSLIVGLGMHGYGKQAIDAFVEMQ 135
           ++++GNAL+DMY KCGSL SAL +F+ +  ++VF W+S+IVG G+HG G +AI  F  M 
Sbjct: 261 NIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSML 320

Query: 134 KEGIKPDRVAFIGLLSGCSHSGLVYEGGQYFSQMDGVYGIKPGI 3
             G++P+ + F+GLL GCSH GLV EG QYF  M   + +KPGI
Sbjct: 321 MAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGI 364