BLASTX nr result
ID: Coptis25_contig00012244
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00012244
(500 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002889127.1| pentatricopeptide repeat-containing protein ... 213 1e-53
ref|NP_177842.1| pentatricopeptide repeat-containing protein [Ar... 209 2e-52
ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi... 208 3e-52
ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|2... 206 1e-51
ref|XP_002514235.1| pentatricopeptide repeat-containing protein,... 199 1e-49
>ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297334968|gb|EFH65386.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 466
Score = 213 bits (543), Expect = 1e-53
Identities = 106/165 (64%), Positives = 121/165 (73%)
Frame = +1
Query: 4 VYLLMTRNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINLYA 183
VYL M R+NV PD YT+PIV+KA A++LG EFCESGFI LY
Sbjct: 103 VYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYC 162
Query: 184 KAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLEPDDVTMVG 363
KAG+ NAR VF+++PERKLGSWNAII GL HAG A EA+ MFME+ +SG EPDD TMV
Sbjct: 163 KAGELENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVS 222
Query: 364 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKC 498
VTSACG LGDLNL QLHKCV QAK EKSD++M+NSLIDMYGKC
Sbjct: 223 VTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKC 267
Score = 61.2 bits (147), Expect = 8e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Frame = +1
Query: 160 SGFINLYAKAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLE 339
+ I++Y K G A +VFE+ P+R + SW+++I+G G+ EA+ F ++ + G+
Sbjct: 258 NSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQMREFGVR 317
Query: 340 PDDVTMVGVTSAC 378
P+ +T VGV SAC
Sbjct: 318 PNKITFVGVLSAC 330
>ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g77170 gi|332197823|gb|AEE35944.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 209 bits (532), Expect = 2e-52
Identities = 103/165 (62%), Positives = 123/165 (74%)
Frame = +1
Query: 4 VYLLMTRNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINLYA 183
VYL M R+ V PD Y++PIV+KA A++LG EFCESGFI LY
Sbjct: 104 VYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYC 163
Query: 184 KAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLEPDDVTMVG 363
KAG+F NARKVF+++PERKLGSWNAII GL HAG A EA+ MF+++ +SGLEPDD TMV
Sbjct: 164 KAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVS 223
Query: 364 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKC 498
VT++CG LGDL+L QLHKCV QAK EKSD++MLNSLIDMYGKC
Sbjct: 224 VTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKC 268
Score = 56.2 bits (134), Expect = 3e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +1
Query: 160 SGFINLYAKAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLE 339
+ I++Y K G A +FE+ +R + SW+++I G G+ EA+ F ++ + G+
Sbjct: 259 NSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVR 318
Query: 340 PDDVTMVGVTSAC 378
P+ +T VGV SAC
Sbjct: 319 PNKITFVGVLSAC 331
>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
protein product [Vitis vinifera]
Length = 479
Score = 208 bits (530), Expect = 3e-52
Identities = 103/165 (62%), Positives = 124/165 (75%)
Frame = +1
Query: 4 VYLLMTRNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINLYA 183
+Y+ M+R V PD YTIPIVLKA A++ GL+L E+CESGFI++Y+
Sbjct: 116 IYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYS 175
Query: 184 KAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLEPDDVTMVG 363
KAG+F NA KVFEQ+ RKLGSWNAII GL+ G AKEA++MFME+ K G EPD+VTMV
Sbjct: 176 KAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVS 235
Query: 364 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKC 498
VTSACGSLG L+L LQLHKCV+QAK E+SD L LNSL+DMYGKC
Sbjct: 236 VTSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKC 280
>ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|222832075|gb|EEE70552.1|
predicted protein [Populus trichocarpa]
Length = 254
Score = 206 bits (525), Expect = 1e-51
Identities = 103/165 (62%), Positives = 122/165 (73%)
Frame = +1
Query: 4 VYLLMTRNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINLYA 183
+Y+ M+ + PD YT+PIVLKA A++LGL+L E+CESGFI+LY+
Sbjct: 63 IYVSMSHAGISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISLYS 122
Query: 184 KAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLEPDDVTMVG 363
K+GDFG+A KVFE++ ERKLGSWNAII GL G AKE I MF+E+ G +PDDVTMV
Sbjct: 123 KSGDFGDAYKVFEENLERKLGSWNAIIGGLCQGGRAKEVIEMFIEMRSCGFKPDDVTMVS 182
Query: 364 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKC 498
VTSACG LGDL+L LQLHK VFQAK F K DMLMLNSLIDMYGKC
Sbjct: 183 VTSACGILGDLHLALQLHKYVFQAKSFVKPDMLMLNSLIDMYGKC 227
>ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546691|gb|EEF48189.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 352
Score = 199 bits (507), Expect = 1e-49
Identities = 98/165 (59%), Positives = 122/165 (73%)
Frame = +1
Query: 4 VYLLMTRNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXXALKLGLDLFEFCESGFINLYA 183
VY+ M+R V PD YT+PIVLKA A++LGL+ E+CESGFI+ Y+
Sbjct: 110 VYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSVAIRLGLESNEYCESGFISFYS 169
Query: 184 KAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLEPDDVTMVG 363
K+GD NA K+FE++PERKLGSWNAII GL+ GHAKEAI +F+E+ K G PDDVTMV
Sbjct: 170 KSGDIKNAYKMFEENPERKLGSWNAIIGGLSQGGHAKEAIEIFIEMRKCGFVPDDVTMVS 229
Query: 364 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKC 498
V SACGSLGDLNL +QLHK VF A F ++++L++NSLIDMYGKC
Sbjct: 230 VISACGSLGDLNLAIQLHKYVFHANVFGRTNILVMNSLIDMYGKC 274
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +1
Query: 160 SGFINLYAKAGDFGNARKVFEQSPERKLGSWNAIISGLTHAGHAKEAISMFMELLKSGLE 339
+ I++Y K G AR+VF E+ + SW ++I G GH EAI F + ++G+
Sbjct: 265 NSLIDMYGKCGRMDLARRVFCTMGEKNVSSWTSMIVGYGMHGHVNEAIEYFHCMREAGVR 324
Query: 340 PDDVTMVGVTSAC 378
P+ VT +GV S C
Sbjct: 325 PNHVTFIGVLSVC 337