BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012208
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    89   3e-16
ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    87   2e-15
ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat...    87   2e-15
ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779...    87   2e-15

>ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 9/102 (8%)
 Frame = +1

Query: 214 SSFSYFVR---------DRCKSGTLGLDEALGLFDKLIQMKHSPSIFPFNQLLGALVKMK 366
           S FS F+R          + KSG   +D+A+ LF +LI M   PS+  FN +LG++VKMK
Sbjct: 33  SKFSVFLRFFSDSQKQNAKKKSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMK 92

Query: 367 HFSVALSMSKRMDAAGIQPNIVTLSTLINCYSNMGRVDFGFA 492
           H+  A+S+SK+M   GI P+IVTLS LINCY ++G + F F+
Sbjct: 93  HYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFS 134


>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 42/99 (42%), Positives = 60/99 (60%)
 Frame = +1

Query: 196 SNTATTSSFSYFVRDRCKSGTLGLDEALGLFDKLIQMKHSPSIFPFNQLLGALVKMKHFS 375
           SN         F++  CKSG +   EA  +F+ LI M+ +P I  FN LLGA+ K+K + 
Sbjct: 50  SNAPDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYF 109

Query: 376 VALSMSKRMDAAGIQPNIVTLSTLINCYSNMGRVDFGFA 492
             +S+ KRM   G+ P+ +TL+ LINCY N+ +VDFG A
Sbjct: 110 DVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLA 148


>ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 40/106 (37%), Positives = 68/106 (64%)
 Frame = +1

Query: 175 IFPSLFHSNTATTSSFSYFVRDRCKSGTLGLDEALGLFDKLIQMKHSPSIFPFNQLLGAL 354
           IFP  FHS   +  +               +D+A+  F++++ M+H+P I  FN++LG+ 
Sbjct: 19  IFPLCFHSQPPSIDNV--------------VDDAVSQFNRMLLMRHTPPIIKFNKILGSP 64

Query: 355 VKMKHFSVALSMSKRMDAAGIQPNIVTLSTLINCYSNMGRVDFGFA 492
           VKMK++  A+S+SK+M+  GI+PN+VTL+ LINC+ ++G + F F+
Sbjct: 65  VKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLGHMAFSFS 110


>ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 34/76 (44%), Positives = 60/76 (78%)
 Frame = +1

Query: 265 LDEALGLFDKLIQMKHSPSIFPFNQLLGALVKMKHFSVALSMSKRMDAAGIQPNIVTLST 444
           +D+A+  F++++ M+H+P I  FN++L +  KMKH+S A+S+S R++  GIQP+++TL+ 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 445 LINCYSNMGRVDFGFA 492
           LINC+ +MG++ FGF+
Sbjct: 100 LINCFCHMGQITFGFS 115


>ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 34/76 (44%), Positives = 60/76 (78%)
 Frame = +1

Query: 265 LDEALGLFDKLIQMKHSPSIFPFNQLLGALVKMKHFSVALSMSKRMDAAGIQPNIVTLST 444
           +D+A+  F++++ M+H+P I  FN++L +  KMKH+S A+S+S R++  GIQP+++TL+ 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 445 LINCYSNMGRVDFGFA 492
           LINC+ +MG++ FGF+
Sbjct: 100 LINCFCHMGQITFGFS 115



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 22/44 (50%), Positives = 35/44 (79%)
 Frame = +1

Query: 361  MKHFSVALSMSKRMDAAGIQPNIVTLSTLINCYSNMGRVDFGFA 492
            MKH+S A+S+S R++  GIQP++ TL+ LINC+ +MG++ F F+
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFS 982