BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012201
         (965 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Ch...   108   2e-21
ref|XP_002525113.1| splicing factor u2af large subunit, putative...   106   9e-21
sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large...   105   1e-20
gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]       105   2e-20
gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]          105   2e-20

>ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
           reinhardtii] gi|158276466|gb|EDP02238.1| U2 snRNP
           auxiliary factor, large subunit [Chlamydomonas
           reinhardtii]
          Length = 306

 Score =  108 bits (269), Expect = 2e-21
 Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = +2

Query: 707 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 883
           Q TRHA R+YVGGLP  A EQ I SFF H L  IG +T GP  AVVN++INREKNFA +E
Sbjct: 7   QATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGNAVVNVYINREKNFAFVE 66

Query: 884 MSSVALASNTMALNGIIFEGTSLRIRR 964
           + +V   SN+MAL+GI+FEG S+R+RR
Sbjct: 67  LRTVEETSNSMALDGIMFEGVSVRVRR 93


>ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
           gi|223535572|gb|EEF37240.1| splicing factor u2af large
           subunit, putative [Ricinus communis]
          Length = 549

 Score =  106 bits (264), Expect = 9e-21
 Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = +2

Query: 707 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 883
           Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 250 QATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVE 309

Query: 884 MSSVALASNTMALNGIIFEGTSLRIRR 964
           M SV  ASN MAL+GIIFEG  +++RR
Sbjct: 310 MRSVEEASNAMALDGIIFEGAPVKVRR 336


>sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
           Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
           subunit B; AltName: Full=U2 small nuclear
           ribonucleoprotein auxiliary factor large subunit B;
           Short=U2 snRNP auxiliary factor large subunit B
           gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor,
           large subunit [Nicotiana plumbaginifolia]
          Length = 573

 Score =  105 bits (263), Expect = 1e-20
 Identities = 54/87 (62%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = +2

Query: 707 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 883
           Q TRHA RVYVGGLPA A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 233 QATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVE 292

Query: 884 MSSVALASNTMALNGIIFEGTSLRIRR 964
           M SV  ASN MAL+GIIFEG   ++RR
Sbjct: 293 MRSVEEASNAMALDGIIFEGAPCKVRR 319


>gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
          Length = 570

 Score =  105 bits (262), Expect = 2e-20
 Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = +2

Query: 707 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 883
           Q TRHA RVYVGGLP  A+EQ + +FF HV+  IG +T GP  AVVN++IN EK FA +E
Sbjct: 231 QATRHARRVYVGGLPPTANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 290

Query: 884 MSSVALASNTMALNGIIFEGTSLRIRR 964
           M SV  ASN MAL+GIIFEG  +++RR
Sbjct: 291 MRSVEEASNAMALDGIIFEGAPVKVRR 317


>gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 506

 Score =  105 bits (262), Expect = 2e-20
 Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
 Frame = +2

Query: 707 QVTRHAHRVYVGGLPAGADEQKIVSFFGHVLVDIGAHT-GPALAVVNIHINREKNFAILE 883
           Q TRHA RVYVGGLP+ A+EQ + +FF HV+  IG +T GP  AV++++IN EK FA +E
Sbjct: 168 QATRHARRVYVGGLPSSANEQSVATFFSHVMYAIGGNTAGPGDAVIDVYINHEKKFAFVE 227

Query: 884 MSSVALASNTMALNGIIFEGTSLRIRR 964
           M SV  ASN MAL+G+IFEG  +R+RR
Sbjct: 228 MRSVEEASNAMALDGVIFEGEPVRVRR 254