BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012174
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34156.3| unnamed protein product [Vitis vinifera]               83   3e-14
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...    83   3e-14
emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]    83   3e-14
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    81   8e-14
ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat...    80   1e-13

>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 29  IIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLMVAIG 208
           ++DA CK+G V EA E+   MI+RG E   VTY++LMDG CLQ +M EA  VFD+MV  G
Sbjct: 261 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 320

Query: 209 HGPDVVSYS 235
             PDV+SY+
Sbjct: 321 FAPDVISYT 329


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 29  IIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLMVAIG 208
           ++DA CK+G V EA E+   MI+RG E   VTY++LMDG CLQ +M EA  VFD+MV  G
Sbjct: 272 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 331

Query: 209 HGPDVVSYS 235
             PDV+SY+
Sbjct: 332 FAPDVISYT 340


>emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 29  IIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLMVAIG 208
           ++DA CK+G V EA E+   MI+RG E   VTY++LMDG CLQ +M EA  VFD+MV  G
Sbjct: 281 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340

Query: 209 HGPDVVSYS 235
             PDV+SY+
Sbjct: 341 FAPDVISYT 349


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 41/74 (55%), Positives = 49/74 (66%)
 Frame = +2

Query: 17  THGIIIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLM 196
           T  I +D  CK GMV EA  +   MIERG   + VTY+SLMDG CL  QM EA+ VFD+M
Sbjct: 386 TFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIM 445

Query: 197 VAIGHGPDVVSYSI 238
           V  G  PDV+SY+I
Sbjct: 446 VNKGCAPDVLSYNI 459



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +2

Query: 17  THGIIIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLM 196
           T  I++DA CK+G+V EA  +F  MI+   E   VTYSSL+ G C     KE+ T+ + M
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375

Query: 197 VAIGHGPDVVSYSI 238
           ++    PDVV++SI
Sbjct: 376 LSRNIRPDVVTFSI 389



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/77 (41%), Positives = 47/77 (61%)
 Frame = +2

Query: 8   QIDTHGIIIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVF 187
           ++ ++ IIID+ CK+ +V EA +LF  M   G     VTY+SL+ G C  GQ K+A  +F
Sbjct: 243 EVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILF 302

Query: 188 DLMVAIGHGPDVVSYSI 238
             M+     PDVV++SI
Sbjct: 303 KEMLEWNMKPDVVTFSI 319


>ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 29  IIDAACKDGMVEEAFELFQTMIERGEEAHAVTYSSLMDGDCLQGQMKEAKTVFDLMVAIG 208
           ++DA CK+G V EA ++   MI+RG E + VTY++LMDG CL+ +M EA  VFD MV  G
Sbjct: 275 VVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG 334

Query: 209 HGPDVVSYS 235
             PDVVSYS
Sbjct: 335 FAPDVVSYS 343