BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00012152
         (652 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003543852.1| PREDICTED: structural maintenance of chromos...   293   2e-77
ref|XP_002323859.1| condensin complex components subunit [Populu...   291   7e-77
ref|XP_003554891.1| PREDICTED: structural maintenance of chromos...   290   2e-76
ref|NP_199671.1| structural maintenance of chromosomes protein 4...   286   2e-75
ref|NP_001190492.1| structural maintenance of chromosomes protei...   286   2e-75

>ref|XP_003543852.1| PREDICTED: structural maintenance of chromosomes protein 4-like
            [Glycine max]
          Length = 1319

 Score =  293 bits (750), Expect = 2e-77
 Identities = 154/216 (71%), Positives = 176/216 (81%)
 Frame = +2

Query: 5    DLGTIDAKYDVAISTACHGLDYIVVETTGSAQACVELLRRKNLGVATFMILDKQVDHLQR 184
            DLG IDAKYDVAISTACHGLDYIVVETT +AQACVELLRR+NLGVATFMIL+KQVD L +
Sbjct: 639  DLGAIDAKYDVAISTACHGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQVDLLPK 698

Query: 185  MKEKVNPPEGVPRLFDLVIVSSERMKLAFFSALQNTVVAKDLDQATRIAYGGNREFSRVV 364
            +K+ V+ PEGVPRLFDLV V  ERMKLAFF+AL+NTVVAKDLDQATRIAYGGN EF RVV
Sbjct: 699  LKKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGGNTEFRRVV 758

Query: 365  TLDGALFEKSXXXXXXXXXXXXXXXXXSIRATSVSGETVANAEKELAKLVDQLNGLRQRI 544
            TLDGALFE S                 SIRATSVS E+VANAEKEL++L D+LN +RQRI
Sbjct: 759  TLDGALFENSGTMSGGGGKPRGGKMGTSIRATSVSVESVANAEKELSRLTDKLNDIRQRI 818

Query: 545  AGAIRQYQASEKTMADLKMDSAKRQKEIHSLNEQHN 652
              A+++YQASEK +A L+M+ AK QKE+ SLN Q+N
Sbjct: 819  MAAVQRYQASEKAVAALEMELAKSQKEVDSLNSQYN 854


>ref|XP_002323859.1| condensin complex components subunit [Populus trichocarpa]
            gi|222866861|gb|EEF03992.1| condensin complex components
            subunit [Populus trichocarpa]
          Length = 1256

 Score =  291 bits (745), Expect = 7e-77
 Identities = 153/216 (70%), Positives = 173/216 (80%)
 Frame = +2

Query: 5    DLGTIDAKYDVAISTACHGLDYIVVETTGSAQACVELLRRKNLGVATFMILDKQVDHLQR 184
            DLG IDAKYDVAISTAC GLDYIVVETT +AQACVELLRR+ LGVATFMIL+KQVDH  +
Sbjct: 570  DLGAIDAKYDVAISTACPGLDYIVVETTAAAQACVELLRREKLGVATFMILEKQVDHSSK 629

Query: 185  MKEKVNPPEGVPRLFDLVIVSSERMKLAFFSALQNTVVAKDLDQATRIAYGGNREFSRVV 364
            MK  V+ PEGVPRLFDLV V  ERMKLAF++AL NTVVAKDLDQATRIAYGGN EF RVV
Sbjct: 630  MKHNVSTPEGVPRLFDLVRVQDERMKLAFYAALGNTVVAKDLDQATRIAYGGNLEFRRVV 689

Query: 365  TLDGALFEKSXXXXXXXXXXXXXXXXXSIRATSVSGETVANAEKELAKLVDQLNGLRQRI 544
            TLDGALFEKS                 SIRATSVSGE V +AEKEL+ +VD+LNG+RQRI
Sbjct: 690  TLDGALFEKSGTMSGGGTKPRGGKMGTSIRATSVSGEAVTSAEKELSTMVDRLNGIRQRI 749

Query: 545  AGAIRQYQASEKTMADLKMDSAKRQKEIHSLNEQHN 652
            A +++ YQASEK +A L+M+ AK QKEI SLN +H+
Sbjct: 750  ADSVKHYQASEKAIAHLEMELAKSQKEIDSLNTEHS 785


>ref|XP_003554891.1| PREDICTED: structural maintenance of chromosomes protein 4-like
            [Glycine max]
          Length = 1242

 Score =  290 bits (741), Expect = 2e-76
 Identities = 152/216 (70%), Positives = 173/216 (80%)
 Frame = +2

Query: 5    DLGTIDAKYDVAISTACHGLDYIVVETTGSAQACVELLRRKNLGVATFMILDKQVDHLQR 184
            DLG IDAKYDVAISTACHGLDYIVVETT +AQACVELLRR+NLGVATFMIL+KQVD L +
Sbjct: 562  DLGAIDAKYDVAISTACHGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQVDLLPK 621

Query: 185  MKEKVNPPEGVPRLFDLVIVSSERMKLAFFSALQNTVVAKDLDQATRIAYGGNREFSRVV 364
            +K+ VN PEGVPRLFDLV V  ERMKLAFF+AL+NTVVAKDLDQATRIAYGGN EF RVV
Sbjct: 622  LKKNVNTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGGNTEFRRVV 681

Query: 365  TLDGALFEKSXXXXXXXXXXXXXXXXXSIRATSVSGETVANAEKELAKLVDQLNGLRQRI 544
            TLDGALFE S                 SIRATS+S E+VANAEKEL++L ++LN  RQRI
Sbjct: 682  TLDGALFENSGTMSGGGSKPRGGKMGTSIRATSMSAESVANAEKELSRLTNKLNDFRQRI 741

Query: 545  AGAIRQYQASEKTMADLKMDSAKRQKEIHSLNEQHN 652
              A++ YQASEK +A L+M+ AK QKE+ SL  Q+N
Sbjct: 742  MAAVQHYQASEKAVAALEMELAKSQKEVDSLKSQYN 777


>ref|NP_199671.1| structural maintenance of chromosomes protein 4 [Arabidopsis
            thaliana] gi|75333958|sp|Q9FJL0.1|SMC4_ARATH RecName:
            Full=Structural maintenance of chromosomes protein 4;
            Short=AtSMC4; Short=SMC protein 4; Short=SMC-4; AltName:
            Full=Chromosome-associated protein C; Short=AtCAP-C
            gi|10177350|dbj|BAB10693.1| chromosome condensation
            protein [Arabidopsis thaliana]
            gi|332008311|gb|AED95694.1| structural maintenance of
            chromosomes protein 4 [Arabidopsis thaliana]
          Length = 1241

 Score =  286 bits (732), Expect = 2e-75
 Identities = 147/216 (68%), Positives = 169/216 (78%)
 Frame = +2

Query: 5    DLGTIDAKYDVAISTACHGLDYIVVETTGSAQACVELLRRKNLGVATFMILDKQVDHLQR 184
            DLG IDAKYDVAISTAC GLDYIVVETT SAQACVELLR+ NLG ATFMIL+KQ DH+ +
Sbjct: 563  DLGAIDAKYDVAISTACAGLDYIVVETTSSAQACVELLRKGNLGFATFMILEKQTDHIHK 622

Query: 185  MKEKVNPPEGVPRLFDLVIVSSERMKLAFFSALQNTVVAKDLDQATRIAYGGNREFSRVV 364
            +KEKV  PE VPRLFDLV V  ERMKLAF++AL NTVVAKDLDQATRIAYGGNREF RVV
Sbjct: 623  LKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRIAYGGNREFRRVV 682

Query: 365  TLDGALFEKSXXXXXXXXXXXXXXXXXSIRATSVSGETVANAEKELAKLVDQLNGLRQRI 544
             LDGALFEKS                 SIRAT VSGE VANAE EL+K+VD LN +R+++
Sbjct: 683  ALDGALFEKSGTMSGGGGKARGGRMGTSIRATGVSGEAVANAENELSKIVDMLNNIREKV 742

Query: 545  AGAIRQYQASEKTMADLKMDSAKRQKEIHSLNEQHN 652
              A+RQY+A+E  ++ L+M+ AK Q+EI SLN +HN
Sbjct: 743  GNAVRQYRAAENEVSGLEMELAKSQREIESLNSEHN 778


>ref|NP_001190492.1| structural maintenance of chromosomes protein 4 [Arabidopsis
            thaliana] gi|332008312|gb|AED95695.1| structural
            maintenance of chromosomes protein 4 [Arabidopsis
            thaliana]
          Length = 1244

 Score =  286 bits (732), Expect = 2e-75
 Identities = 147/216 (68%), Positives = 169/216 (78%)
 Frame = +2

Query: 5    DLGTIDAKYDVAISTACHGLDYIVVETTGSAQACVELLRRKNLGVATFMILDKQVDHLQR 184
            DLG IDAKYDVAISTAC GLDYIVVETT SAQACVELLR+ NLG ATFMIL+KQ DH+ +
Sbjct: 563  DLGAIDAKYDVAISTACAGLDYIVVETTSSAQACVELLRKGNLGFATFMILEKQTDHIHK 622

Query: 185  MKEKVNPPEGVPRLFDLVIVSSERMKLAFFSALQNTVVAKDLDQATRIAYGGNREFSRVV 364
            +KEKV  PE VPRLFDLV V  ERMKLAF++AL NTVVAKDLDQATRIAYGGNREF RVV
Sbjct: 623  LKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRIAYGGNREFRRVV 682

Query: 365  TLDGALFEKSXXXXXXXXXXXXXXXXXSIRATSVSGETVANAEKELAKLVDQLNGLRQRI 544
             LDGALFEKS                 SIRAT VSGE VANAE EL+K+VD LN +R+++
Sbjct: 683  ALDGALFEKSGTMSGGGGKARGGRMGTSIRATGVSGEAVANAENELSKIVDMLNNIREKV 742

Query: 545  AGAIRQYQASEKTMADLKMDSAKRQKEIHSLNEQHN 652
              A+RQY+A+E  ++ L+M+ AK Q+EI SLN +HN
Sbjct: 743  GNAVRQYRAAENEVSGLEMELAKSQREIESLNSEHN 778