BLASTX nr result
ID: Coptis25_contig00011974
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00011974
(1028 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vit... 310 4e-82
ref|XP_002511787.1| DNA binding protein, putative [Ricinus commu... 275 1e-71
gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago trun... 262 9e-68
ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago... 262 9e-68
ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like... 259 7e-67
>ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product
[Vitis vinifera]
Length = 667
Score = 310 bits (794), Expect = 4e-82
Identities = 162/300 (54%), Positives = 208/300 (69%)
Frame = -1
Query: 1028 CGCPTCTLDRKNKEQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSL 849
C C TC +DRK K QKK ENWQL VC+KI+ E+NFPN+EIIE+YL + G FT+ + P +
Sbjct: 371 CDCSTCDMDRKEKAQKKQENWQLRVCKKIAMEQNFPNNEIIELYLSNNHGHFTEKDGPHI 430
Query: 848 LWEEPKIESLIDFLGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSI 669
WE PK E L+DFL YHQHW+PSYIRQRMLP+LST + R+ A NPT N LL+GQYEFDSI
Sbjct: 431 SWESPKTEVLVDFLAYHQHWEPSYIRQRMLPMLSTIFFREKALNPT-NTLLYGQYEFDSI 489
Query: 668 QRVKIRYGQPCYLVTWRKNSPALGNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQI 489
QRVK+R+G ++V W+K A+ +V+Y I P D+++E + E+ E+ DLLDE +VPQI
Sbjct: 490 QRVKVRFGHQFFVVKWKKAVHAMASVAYTI-PGDSDIEQEKLTEVDESIDLLDECNVPQI 548
Query: 488 LVDAGCSFLLTEENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPK 309
VD GC FLLT+ENM+LVRAAFP +V ++L EG + +SPK
Sbjct: 549 HVDDGCWFLLTDENMDLVRAAFPEEVNRFL-LEKELKESKRRNKSGLRSEGVEEMPDSPK 607
Query: 308 SRGIQLSITEFYRSTKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLF 129
S+G+QLSITEFYRS K K EDSA + + + EKR+ + + LSKSVRRRLLF
Sbjct: 608 SKGVQLSITEFYRSAKVIFHEK-PEDSAGNSDAQGRETSTEKRKASDSKLSKSVRRRLLF 666
>ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative
[Ricinus communis]
Length = 609
Score = 275 bits (704), Expect = 1e-71
Identities = 145/301 (48%), Positives = 195/301 (64%), Gaps = 1/301 (0%)
Frame = -1
Query: 1028 CGCPTCTLDRKNKEQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSL 849
C C +C DRK KE++K ENWQ+ VC K+ E NFPND+IIEMYL + FT+ + L
Sbjct: 317 CNCGSCNKDRKAKEEQKRENWQIKVCDKMFMEPNFPNDDIIEMYLCNNHAEFTEDDDTCL 376
Query: 848 LWEEPKIESLIDFLGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSI 669
W P + L+DFL +H+ W PSYIRQR+LP+LST YLR MA+ P E LL+GQYEFDSI
Sbjct: 377 SWGSPNTDMLVDFLAFHKLWHPSYIRQRILPVLSTIYLRDMAAKP-EKALLYGQYEFDSI 435
Query: 668 QRVKIRYGQPCYLVTWRKNSPAL-GNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQ 492
QR+K+RYG Y++ W+K + + N+ NI E+ D +ED+++ E+ D L+E +VP+
Sbjct: 436 QRIKVRYGHESYVIKWKKAANTISSNICINI-VEELDKHQEDIVKTDESIDQLEEYNVPK 494
Query: 491 ILVDAGCSFLLTEENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESP 312
VD GC FLLT+ENM+LV+ AFP V+K+L +K ES
Sbjct: 495 SYVDDGCWFLLTDENMDLVQNAFPDAVDKFL-------KEKEQKESKRRLSSSTEKSESV 547
Query: 311 KSRGIQLSITEFYRSTKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLL 132
KS+G+QL+ITEFYRSTK A E+ A EN + EKR+++++NL KSVRRRLL
Sbjct: 548 KSKGVQLNITEFYRSTKVQFAASGGEEQADCSENQDDVISTEKRKISSSNLPKSVRRRLL 607
Query: 131 F 129
F
Sbjct: 608 F 608
>gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
Length = 547
Score = 262 bits (670), Expect = 9e-68
Identities = 137/303 (45%), Positives = 198/303 (65%), Gaps = 2/303 (0%)
Frame = -1
Query: 1028 CGCPTCTLDRKNKEQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSL 849
C C +C ++RK+KEQKK ENW +C KI+ E NFP DEII+MYL + G F+ + P +
Sbjct: 250 CDCNSCCMNRKHKEQKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQI 309
Query: 848 LWEEPKIESLIDFLGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSI 669
WE P ++ L+DFL +HQ+WDPSYIR+ M P++ST +LR+MA+ PT++LL GQ+EF S+
Sbjct: 310 SWERPNMDLLVDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSLLF-GQFEFASL 368
Query: 668 QRVKIRYGQPCYLVTWRKNSPALGNVSYNIEPEQFDVQEEDV-LELSEANDLLDEPDVPQ 492
+RVK RYG Y+V W++ A+GN++ + +QE+ + L++ E DLLD+ D PQ
Sbjct: 369 KRVKTRYGYQFYVVKWKR---AMGNIASKTPANKSGMQEDVIELDVDETVDLLDDCDFPQ 425
Query: 491 ILVDAGCSFLLTEENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESP 312
I + GCSFLLT+ENM+LV AA+P +V+++ E E SP
Sbjct: 426 ICEEDGCSFLLTDENMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTSISQENEKSS-TSP 484
Query: 311 KSRGIQLSITEFYRSTKTFVQAKQ-EEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRL 135
S+G+QL+ITEF+ +TK+ K EE S+ +N G +K KR+ ++ N+ KSVRRRL
Sbjct: 485 NSKGVQLNITEFFPTTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSSSPNIPKSVRRRL 544
Query: 134 LFD 126
LFD
Sbjct: 545 LFD 547
>ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif,
class 2 [Medicago truncatula] gi|355498862|gb|AES80065.1|
Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 262 bits (670), Expect = 9e-68
Identities = 137/303 (45%), Positives = 198/303 (65%), Gaps = 2/303 (0%)
Frame = -1
Query: 1028 CGCPTCTLDRKNKEQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSL 849
C C +C ++RK+KEQKK ENW +C KI+ E NFP DEII+MYL + G F+ + P +
Sbjct: 315 CDCNSCCMNRKHKEQKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQI 374
Query: 848 LWEEPKIESLIDFLGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSI 669
WE P ++ L+DFL +HQ+WDPSYIR+ M P++ST +LR+MA+ PT++LL GQ+EF S+
Sbjct: 375 SWERPNMDLLVDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSLLF-GQFEFASL 433
Query: 668 QRVKIRYGQPCYLVTWRKNSPALGNVSYNIEPEQFDVQEEDV-LELSEANDLLDEPDVPQ 492
+RVK RYG Y+V W++ A+GN++ + +QE+ + L++ E DLLD+ D PQ
Sbjct: 434 KRVKTRYGYQFYVVKWKR---AMGNIASKTPANKSGMQEDVIELDVDETVDLLDDCDFPQ 490
Query: 491 ILVDAGCSFLLTEENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESP 312
I + GCSFLLT+ENM+LV AA+P +V+++ E E SP
Sbjct: 491 ICEEDGCSFLLTDENMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTSISQENEKSS-TSP 549
Query: 311 KSRGIQLSITEFYRSTKTFVQAKQ-EEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRL 135
S+G+QL+ITEF+ +TK+ K EE S+ +N G +K KR+ ++ N+ KSVRRRL
Sbjct: 550 NSKGVQLNITEFFPTTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSSSPNIPKSVRRRL 609
Query: 134 LFD 126
LFD
Sbjct: 610 LFD 612
>ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap
endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap
endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 259 bits (662), Expect = 7e-67
Identities = 138/301 (45%), Positives = 192/301 (63%)
Frame = -1
Query: 1028 CGCPTCTLDRKNKEQKKHENWQLGVCRKISAEKNFPNDEIIEMYLKHKRGTFTDVEIPSL 849
C C +C +DR+ KE+KK ENW+L V KI+ E NFP+ E+I+MY F+D ++ L
Sbjct: 317 CNCSSCNMDREEKEKKKQENWRLRVRNKIAMEPNFPSSELIQMYQCDNHSYFSDDDLV-L 375
Query: 848 LWEEPKIESLIDFLGYHQHWDPSYIRQRMLPLLSTNYLRKMASNPTENLLLHGQYEFDSI 669
W P+ E L+DFL +H W+PSYIRQRMLP+LST +LR+MA+NPT+ LL+GQYEFDSI
Sbjct: 376 SWGSPRTEMLVDFLVFHLQWEPSYIRQRMLPMLSTIFLREMANNPTQT-LLYGQYEFDSI 434
Query: 668 QRVKIRYGQPCYLVTWRKNSPALGNVSYNIEPEQFDVQEEDVLELSEANDLLDEPDVPQI 489
R KIRYG Y+V W+K PA+ + +Y +F +D +++ EA +L DE D P+I
Sbjct: 435 LREKIRYGHSFYVVKWKKAVPAISS-TYEDSSGEFGTGPDDAIDVDEAVNLTDESDSPKI 493
Query: 488 LVDAGCSFLLTEENMELVRAAFPGKVEKYLHXXXXXXXXXXXXXXXXXXEGEHDKFESPK 309
+ GCSFLLT+ENMELV AA+P + K+L K +S K
Sbjct: 494 HIQDGCSFLLTDENMELVAAAYPEQAAKFLQEKEMKRQKTPSTPACE----TSGKSDSSK 549
Query: 308 SRGIQLSITEFYRSTKTFVQAKQEEDSAKLPENPQKGHAKEKRRMATANLSKSVRRRLLF 129
++G+QLSITEFYR+TKT +Q D+ L ++ +++ +++ LSKSVRRRLLF
Sbjct: 550 AKGVQLSITEFYRATKT----QQTADTTDLTNEDEETSTGKRKASSSSTLSKSVRRRLLF 605
Query: 128 D 126
D
Sbjct: 606 D 606