BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011895
         (1760 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271571.1| PREDICTED: uncharacterized protein LOC100251...   694   0.0  
ref|XP_002331856.1| predicted protein [Populus trichocarpa] gi|2...   670   0.0  
ref|XP_002519751.1| conserved hypothetical protein [Ricinus comm...   667   0.0  
ref|XP_003629892.1| Ribosome maturation factor rimM [Medicago tr...   592   e-166
ref|NP_568663.2| RimM-like 16S rRNA processing protein [Arabidop...   572   e-160

>ref|XP_002271571.1| PREDICTED: uncharacterized protein LOC100251997 [Vitis vinifera]
            gi|297740629|emb|CBI30811.3| unnamed protein product
            [Vitis vinifera]
          Length = 665

 Score =  694 bits (1791), Expect = 0.0
 Identities = 351/579 (60%), Positives = 455/579 (78%), Gaps = 4/579 (0%)
 Frame = +3

Query: 3    IEGELRVKPNTDFPELRFAEPGRRWLKEQYSGKEIIREVELVEGRDHPGQKSWIVRFSGI 182
            ++GE+RVKPNTDFPELRFAEPG RWL++Q+SGKE IREVELVEGR HPGQK+WI++F GI
Sbjct: 89   LQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVELVEGRGHPGQKTWILKFGGI 148

Query: 183  DTVEKAKQLIGSTLLVMEEDRPVLEEGEFYTRDLVGMKVILKDTGLSVGTVVNVFNSGGP 362
            DTVE+AKQL+GS+LLV E+DRP LEEGEFY+RDL+GM+V LK+TG  VGTVVNVF++G  
Sbjct: 149  DTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVTLKETGEPVGTVVNVFSTGA- 207

Query: 363  NDLLQVMLNSSDEAHDATGSSEAGPGVSGHLAWVPFVKAIVPDVDMNRREMRITPPKGLL 542
            NDLLQVML+ S +  D TG+ ++  GVSG L WVPFV+AIVP+VDMN+REM+ITPPKGLL
Sbjct: 208  NDLLQVMLDPSVKTPDHTGNPKSETGVSGPLVWVPFVEAIVPNVDMNKREMQITPPKGLL 267

Query: 543  ELNLRSDIRSKKERRQLEWKERKKASRRLIAAKKKLSEMEQKHIFHGLRFGEKAQRNLLA 722
            ELNLRS  RSKKERRQLEWK+R+K  RRLIAAKKKL EMEQ+H+FHG RFG+KAQR+LLA
Sbjct: 268  ELNLRSHERSKKERRQLEWKQRRKFQRRLIAAKKKLHEMEQQHVFHGFRFGQKAQRSLLA 327

Query: 723  DHIVGINFKLFQDALQNFETVTTRWNLSEFISAYSTKLLENPIKVSEECLISCGTKDNMD 902
            D IVG+N KL Q ALQN E  + RW+ SEFIS   TKL +  +KVS++CL + G+++ +D
Sbjct: 328  DQIVGVNSKLLQQALQNIELSSQRWSSSEFISTKLTKLGQRTLKVSKKCLTTPGSEEKLD 387

Query: 903  ATEGMKIKGLNMISEGKAAIVLVVGDQTSQGRFSNLEQGDSGRAENSSNISHIQALLNDE 1082
            +   ++ KGL+++S+GK AIVL V D    GR S  E  DS  A NS+  S +Q LL+D+
Sbjct: 388  SNFELQEKGLHLMSKGKMAIVLFVNDSEKHGRCSVPELVDSESAGNST--SFLQTLLSDD 445

Query: 1083 ----LEGDCGFLPLVMVSPAHETQAIQQSFLDHDYFSFNTDKVWFLEEENLPVVSNSVEE 1250
                 + D   +PL+MVSPAHE  +++  F +HD+F+F+  KVWFLE+E LPVVSNS+  
Sbjct: 446  RISLKKEDRVSVPLIMVSPAHEVHSLENLFSNHDHFAFDPKKVWFLEDEKLPVVSNSLGG 505

Query: 1251 EHRHKVLMKSQWEILQSPVGSGGIFSLLSSHTILEDLNEMGVEYVQVCSLGKRSIVGNPL 1430
            E+  K+LMKS WEILQ+ VGSGG+ SLLSS  IL++L+EMGVEY+++CS+ +  + G+ L
Sbjct: 506  ENTQKILMKSPWEILQTSVGSGGVISLLSSENILDNLSEMGVEYIEICSVNEEFVSGHSL 565

Query: 1431 FFGYVKSREADLGIKICKSNGESEDDFNVIFSLKYLKKITKQSDKLKFHAITKQNSHVEM 1610
              G V S E+D+GI+I +   + E++F++IFS+K++ K+ KQ  KL+FH I K NSHVEM
Sbjct: 566  -LGLVSSLESDVGIQISEGIEDIEENFHMIFSMKFMSKLAKQMKKLQFHGIPKLNSHVEM 624

Query: 1611 IDKEWVDVVPQSPNSYELHCSICSSLSVCPPDRICVMEV 1727
            ++KEWVDV P SPNS EL CSI SSL+ C  D++CV+E+
Sbjct: 625  VEKEWVDVTPTSPNSLELGCSIYSSLNACSLDKVCVVEI 663


>ref|XP_002331856.1| predicted protein [Populus trichocarpa] gi|222875374|gb|EEF12505.1|
            predicted protein [Populus trichocarpa]
          Length = 673

 Score =  670 bits (1728), Expect = 0.0
 Identities = 342/581 (58%), Positives = 451/581 (77%), Gaps = 5/581 (0%)
 Frame = +3

Query: 3    IEGELRVKPNTDFPELRFAEPGRRWLKEQYSGKEIIREVELVEGRDHPGQKSWIVRFSGI 182
            ++GE+ VKP TDFPELRF++PGRRWL++  SGK++IREVELVEGR H G+KSWI++F GI
Sbjct: 96   LQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVELVEGRGHHGRKSWILKFGGI 155

Query: 183  DTVEKAKQLIGSTLLVMEEDRPVLEEGEFYTRDLVGMKVILKDTGLSVGTVVNVFNSGGP 362
            DTV++AK L+GSTLLV E +RP LEEGEFY+RDL+GM+VILK+TG  VGTVVNVF++GG 
Sbjct: 156  DTVDRAKLLVGSTLLVREYERPELEEGEFYSRDLIGMRVILKETGECVGTVVNVFDNGG- 214

Query: 363  NDLLQVMLNSSDEAHDATGSSE-AGPGVSGHLAWVPFVKAIVPDVDMNRREMRITPPKGL 539
            NDLLQVML +S +    TG S+ A  GVSGHLAWVPFV+AIVPDV+MN REMRITPPKGL
Sbjct: 215  NDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEAIVPDVNMNEREMRITPPKGL 274

Query: 540  LELNLRSDIRSKKERRQLEWKERKKASRRLIAAKKKLSEMEQKHIFHGLRFGEKAQRNLL 719
            LELNLR D RSKKERR+LEW+ERKK  RRLIAAKKKL EMEQKH+F GLR+G+K++R LL
Sbjct: 275  LELNLRQDERSKKERRELEWRERKKFQRRLIAAKKKLCEMEQKHVFDGLRYGDKSKRGLL 334

Query: 720  ADHIVGINFKLFQDALQNFETVTTRWNLSEFISAYSTKLLENPIKVSEECLISCGTKDNM 899
            AD IVG+N KL Q AL+N E  + R + +E ISA  TK +++ + +S+E  I+C  ++ +
Sbjct: 335  ADQIVGVNSKLLQQALENIEISSKRCSATELISATRTKHIKSSLMISKE-FITCANEEKL 393

Query: 900  DATEGMKIKGLNMISEGKAAIVLVVGDQTSQGRFSNLEQGDSGRAENSSNISHIQALLND 1079
             A   ++ KGL++IS GK AIVLV+ D   +G+  N    DS  +ENS  +  +Q  L+D
Sbjct: 394  GANFKLQEKGLSLISTGKVAIVLVLND-IEKGKGDNPGVVDSESSENSL-LFFLQKSLSD 451

Query: 1080 ELE----GDCGFLPLVMVSPAHETQAIQQSFLDHDYFSFNTDKVWFLEEENLPVVSNSVE 1247
            +       D   +PL++V PA E Q++Q+ F ++DYF+F+++KVWFLEEE +PVVS+S E
Sbjct: 452  DQTFVKIEDRVSVPLILVCPAQEIQSLQKLFSNNDYFAFDSNKVWFLEEEKIPVVSSSEE 511

Query: 1248 EEHRHKVLMKSQWEILQSPVGSGGIFSLLSSHTILEDLNEMGVEYVQVCSLGKRSIVGNP 1427
            E  RHK++MKS WEILQSPVGSGG+ SLLSS  I E+L++MGVEY+++CS  +  + G+P
Sbjct: 512  EGKRHKIMMKSPWEILQSPVGSGGVISLLSSVNIPENLSKMGVEYIEICSSSQNCVTGSP 571

Query: 1428 LFFGYVKSREADLGIKICKSNGESEDDFNVIFSLKYLKKITKQSDKLKFHAITKQNSHVE 1607
            L  G+V+SR+A++GIKI +   + E+ F++IFSL +++ + +Q  KL+F+AI K N HVE
Sbjct: 572  LLLGFVESRKAEIGIKIVEDTKDLEESFDMIFSLNFMRLLAQQIHKLQFYAIPKPNLHVE 631

Query: 1608 MIDKEWVDVVPQSPNSYELHCSICSSLSVCPPDRICVMEVT 1730
            M+ KEWVDVVP SPNSYEL  SI SSL+ CP ++ICVME+T
Sbjct: 632  MVGKEWVDVVPSSPNSYELRSSIYSSLNACPLEKICVMEIT 672


>ref|XP_002519751.1| conserved hypothetical protein [Ricinus communis]
            gi|223541168|gb|EEF42724.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 631

 Score =  667 bits (1721), Expect = 0.0
 Identities = 336/581 (57%), Positives = 445/581 (76%), Gaps = 5/581 (0%)
 Frame = +3

Query: 3    IEGELRVKPNTDFPELRFAEPGRRWLKEQYSGKEIIREVELVEGRDHPGQKSWIVRFSGI 182
            ++GE+ VKP+TDFPELRF++PGRRWL++Q SGK++I+EVEL+EGR + GQKSWI+RF GI
Sbjct: 52   LQGEICVKPSTDFPELRFSQPGRRWLRQQISGKDMIQEVELIEGRGYHGQKSWILRFDGI 111

Query: 183  DTVEKAKQLIGSTLLVMEEDRPVLEEGEFYTRDLVGMKVILKDTGLSVGTVVNVFNSGGP 362
            DTVE+A+QL+GSTLLV E+DRP LEEG+FYTRDLVGM+VILK+TG  VGTVVNVF+SG  
Sbjct: 112  DTVEQARQLVGSTLLVREDDRPELEEGDFYTRDLVGMRVILKETGQCVGTVVNVFDSGA- 170

Query: 363  NDLLQVMLNSSDEAHDATGS-SEAGPGVSGHLAWVPFVKAIVPDVDMNRREMRITPPKGL 539
             DLLQVML  ++   + T     A  GVS  L WVPFV+AIVPDVDM +REM ITPPKGL
Sbjct: 171  GDLLQVMLCPTEGVPEGTEKLMTAETGVSSPLVWVPFVEAIVPDVDMTKREMWITPPKGL 230

Query: 540  LELNLRSDIRSKKERRQLEWKERKKASRRLIAAKKKLSEMEQKHIFHGLRFGEKAQRNLL 719
            L+LN+RSD RSKKERRQLEWKERKK  RRLIAAKKKL EMEQKH+F GLR+GEK QR+ L
Sbjct: 231  LKLNIRSDERSKKERRQLEWKERKKFQRRLIAAKKKLCEMEQKHVFDGLRYGEKPQRSSL 290

Query: 720  ADHIVGINFKLFQDALQNFETVTTRWNLSEFISAYSTKLLENPIKVSEECLISCGTKDNM 899
            AD IVG+N KL Q ALQN      RW ++E ISA  TKL++  +K+S++CL  C T++++
Sbjct: 291  ADQIVGVNSKLLQQALQNIGISFQRWGITELISATRTKLIQRSLKLSKKCLTPCATEESL 350

Query: 900  DATEGMKIKGLNMISEGKAAIVLVVGDQTSQGRFSNLEQGDSGRAENSSNISHIQALLND 1079
             A   M+ KGLN++S GK  IVLVV +    G   + +  D+  +E+ +  S +Q  L+D
Sbjct: 351  TAYFDMQDKGLNLLSTGKVGIVLVVNEVDKNGTSHSPDVVDTKNSEDLA-FSLLQKSLSD 409

Query: 1080 ELE----GDCGFLPLVMVSPAHETQAIQQSFLDHDYFSFNTDKVWFLEEENLPVVSNSVE 1247
            +       D  F+PLV+V P  E +++++ F D+DYF F+TDKVWFLEEE LPVV++S E
Sbjct: 410  DQSFLKMEDRAFVPLVLVCPMQEIRSLKKLFSDNDYFGFDTDKVWFLEEEKLPVVNSSYE 469

Query: 1248 EEHRHKVLMKSQWEILQSPVGSGGIFSLLSSHTILEDLNEMGVEYVQVCSLGKRSIVGNP 1427
            E  R K+LMKS WEILQ PVGSGG+ SLLS+H I E LN+M V+Y++VCS+G+ +++GN 
Sbjct: 470  EPSRCKILMKSPWEILQVPVGSGGVISLLSTHGIPEILNKMDVKYIEVCSVGQNNVLGNA 529

Query: 1428 LFFGYVKSREADLGIKICKSNGESEDDFNVIFSLKYLKKITKQSDKLKFHAITKQNSHVE 1607
            L  GYV S +A++G++I +    SE+ F++IFS   +K++T++ DKL+FH I+K NS+VE
Sbjct: 530  LLLGYVNSCKAEIGLQIFEDTEGSEESFDMIFSNSSMKRLTEEMDKLQFHTISKPNSYVE 589

Query: 1608 MIDKEWVDVVPQSPNSYELHCSICSSLSVCPPDRICVMEVT 1730
            ++DKEW D++P SPNSY+ + SI S+L+ CP D+ICV+E+T
Sbjct: 590  LVDKEWTDIIPSSPNSYQFYSSIYSALNGCPLDKICVIEIT 630


>ref|XP_003629892.1| Ribosome maturation factor rimM [Medicago truncatula]
            gi|355523914|gb|AET04368.1| Ribosome maturation factor
            rimM [Medicago truncatula]
          Length = 667

 Score =  592 bits (1526), Expect = e-166
 Identities = 306/589 (51%), Positives = 423/589 (71%), Gaps = 15/589 (2%)
 Frame = +3

Query: 6    EGELRVKPNTDFPELRFAEPGRRWLKEQYSGKEIIREVELVEGRDHPGQKSWIVRFSGID 185
            +G++RVKPNTDFPELRF+ PGRRWLK++  G E ++E+EL EGR+H GQ  WI++FSGID
Sbjct: 80   QGDVRVKPNTDFPELRFSTPGRRWLKQKVMGGENVQEIELEEGREHSGQNCWILKFSGID 139

Query: 186  TVEKAKQLIGSTLLVMEEDRPVLEEGEFYTRDLVGMKVILKDTGLSVGTVVNVFNSGGPN 365
            + E+AK LIG+TLLV EEDRP LEEGEFYT DL GM+V +K+ G  +GTV+NVFN+G  N
Sbjct: 140  SAEEAKILIGATLLVTEEDRPELEEGEFYTHDLNGMRVFMKENGKLLGTVINVFNNGA-N 198

Query: 366  DLLQVMLNSSDEAHDATGSSEAGP-GVSGHLAWVPFVKAIVPDVDMNRREMRITPPKGLL 542
            DLLQ+ L+SS +  D  G  +      SG L  VPFV+AIVPDVDMNRREM ITPPKGLL
Sbjct: 199  DLLQISLDSSFDVLDKNGKPKPEEIEASGQLVLVPFVEAIVPDVDMNRREMHITPPKGLL 258

Query: 543  ELNLRSDIRSKKERRQLEWKERKKASRRLIAAKKKLSEMEQKHIFHGLRFGEKAQRNLLA 722
            ELNLR D RSKKERRQLEWKERKK  +RLIAAKKKL EM+Q+H+FHG + GEK Q +LL+
Sbjct: 259  ELNLRFDDRSKKERRQLEWKERKKFQKRLIAAKKKLREMDQQHVFHGFQCGEKEQWSLLS 318

Query: 723  DHIVGINFKLFQDALQNFETVTTRWNLSEFISAYSTKLLENPIKVSEECLISCGTKDNMD 902
            D IVG+N +L Q+ALQ+ E    RWN +E +SA   K +   +++SE  L++      + 
Sbjct: 319  DQIVGVNSRLLQEALQSLEQPANRWNAAELVSAMEEKRIRT-VQISERSLLTGSKTKLVR 377

Query: 903  ATEGMKIKGLNMISEGKAAIVLVVGDQTSQGRFSNLEQGDSGRAENSSNISHIQALLNDE 1082
                MK KG+ +IS GK AIVL++ ++ ++G   + E  ++  A  +S +  +Q LL+D 
Sbjct: 378  NIINMKEKGVELISNGKMAIVLLLKEKENEGCIYDPEVVEN-EATETSTLHMLQNLLSDH 436

Query: 1083 LE----GDCGFLPLVMVSPAHETQAIQQSFLDHDYFSFNTDKV----------WFLEEEN 1220
             +     D   +PL++VS A + Q+++  F  +++F+F+++KV          WFLEEE 
Sbjct: 437  EKFVKVNDRVSVPLILVSSAQQIQSLRNLFTRNNHFAFDSEKVHIISSTFPFVWFLEEEK 496

Query: 1221 LPVVSNSVEEEHRHKVLMKSQWEILQSPVGSGGIFSLLSSHTILEDLNEMGVEYVQVCSL 1400
            LPVVS+S+E ++++K+LMKS WEILQSPVGSGG  SL S H+I ++L  MGVEY+++C  
Sbjct: 497  LPVVSSSLEGQNKYKILMKSPWEILQSPVGSGGFISLFSKHSITDNLINMGVEYLELCCP 556

Query: 1401 GKRSIVGNPLFFGYVKSREADLGIKICKSNGESEDDFNVIFSLKYLKKITKQSDKLKFHA 1580
             +RS+ GN L  G V +REA +GI+I  +  + +++F++I S++++KK+TKQS KL+F A
Sbjct: 557  CERSVGGNSLLVGLVDAREAKIGIQISPTIADPDENFDMILSMEFVKKLTKQSYKLRFDA 616

Query: 1581 ITKQNSHVEMIDKEWVDVVPQSPNSYELHCSICSSLSVCPPDRICVMEV 1727
              K NS +E +DK+WV V   +PNSYEL CS+ SSL+ CP D++C++EV
Sbjct: 617  TAKTNSFIESVDKDWVTVTSSTPNSYELSCSVYSSLNACPLDKVCIVEV 665


>ref|NP_568663.2| RimM-like 16S rRNA processing protein [Arabidopsis thaliana]
            gi|10177579|dbj|BAB10810.1| unnamed protein product
            [Arabidopsis thaliana] gi|332008000|gb|AED95383.1|
            RimM-like 16S rRNA processing protein [Arabidopsis
            thaliana]
          Length = 653

 Score =  572 bits (1474), Expect = e-160
 Identities = 296/586 (50%), Positives = 414/586 (70%), Gaps = 10/586 (1%)
 Frame = +3

Query: 3    IEGELRVKPNTDFPELRFAEPGRRWLKEQYSGKEIIREVELVEGRDHPGQKSWIVRFSGI 182
            ++GE+ +KPNTDFP+LRF++PGRRWLK+Q  G++ I EVELVEGR HP QKSWI++F G+
Sbjct: 92   LQGEICIKPNTDFPDLRFSKPGRRWLKQQLLGQDKIDEVELVEGRPHPAQKSWILKFRGL 151

Query: 183  DTVEKAKQLIGSTLLVMEEDRPVLEEGEFYTRDLVGMKVILKDTGLSVGTVVNVFNSGGP 362
            D V++ +QL+G+TLL  ++DRP L+EGEFY+RDLVGM+V+LK+TG  VGTV N+F++GG 
Sbjct: 152  DDVDQVRQLVGATLLAEDDDRPELDEGEFYSRDLVGMRVLLKETGQLVGTVANIFDNGG- 210

Query: 363  NDLLQVMLNSSDEAHDATGSSEAGPGVSGHLAWVPFVKAIVPDVDMNRREMRITPPKGLL 542
            NDLL V+L+SS E  +       G   +  L W+PFV AIVPDVD+ R+EM ITPPKGLL
Sbjct: 211  NDLLHVLLDSSMEVCN-------GNAKTNQLVWIPFVDAIVPDVDLERKEMYITPPKGLL 263

Query: 543  ELNLRSDIRSKKERRQLEWKERKKASRRLIAAKKKLSEMEQKHIFHGLRFGEKAQRNLLA 722
            E+N+R+D RSKKERRQLEWKERKK  +RLIAAKKKL EMEQKH+F GLRFGEK+QRNLLA
Sbjct: 264  EVNMRADDRSKKERRQLEWKERKKQQKRLIAAKKKLCEMEQKHVFDGLRFGEKSQRNLLA 323

Query: 723  DHIVGINFKLFQDALQNFETVTTRWNLSEFISAYSTKLLENPIKVSEECLISCGTKDNMD 902
            DHI+ +N  L Q ALQ+ +T + RWN++E I+A   ++ E  + VS ECL    +K+NM 
Sbjct: 324  DHILNVNSTLLQKALQSIDTSSKRWNVTEEINALRARVSECNLSVSRECLSFDASKENMG 383

Query: 903  ATEGMKIKGLNMISEGKAAIVLVVGDQTSQGRFSNLEQGDSGRAENSSNISHIQALLNDE 1082
                   +G N+ SEGK +I LV+ D  ++       +G++G       +S++ ALL++E
Sbjct: 384  DNFSFLQQGQNLFSEGKVSICLVLNDHENEE-----PEGENG------VVSYLHALLDEE 432

Query: 1083 ----LEGDCGFLPLVMVSPAHETQAIQQSFLDHDYFSFNTDKVWFLEEENLPVVSNSVEE 1250
                 E D   +PLV+VSP H  +A+Q+ F D+D+F F ++K+W L+EE LPVV +S EE
Sbjct: 433  QRFIKEEDRACVPLVIVSPEHTIEALQKLFQDNDHFGFESEKIWILKEETLPVVCSSPEE 492

Query: 1251 EHRHKVLMKSQWEILQSPVGSGGIFSLLSSHTILEDLNEMGVEYVQVCSLGKRSIVG--- 1421
              +HK+LMKS WEIL+SPVGSGG+ S+L+SH   + L+ +G+ Y+QV S+  +       
Sbjct: 493  PKKHKILMKSPWEILESPVGSGGVLSILASHGTTDSLSTLGINYLQVHSIETKPQPSQHY 552

Query: 1422 -NPLFFGYVKSREADLGIKICKSNGESE-DDFNVIFSLKYLKKITKQSDKLKFHAITKQN 1595
             NP+  G+V +R A++GI++ +   ESE  +  + FS+K+LK++     K++F A+ K N
Sbjct: 553  INPMLVGFVSARGAEIGIQVTE---ESELKNLEMTFSMKFLKRL---KGKIEFEAVMKMN 606

Query: 1596 SHVEMIDKEWVDVVPQSPNSYELHCSICSSLSVCPPD-RICVMEVT 1730
            SHV+ ++KEWV+ VP  PNS+E    I   LS C    +IC+M +T
Sbjct: 607  SHVQNVEKEWVESVPSEPNSFEFRSDIYRVLSECSSSAKICLMNIT 652