BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011880
         (918 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   254   2e-65
ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   251   2e-64
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              247   3e-63
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   247   3e-63
ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|2...   246   4e-63

>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  254 bits (650), Expect = 2e-65
 Identities = 121/175 (69%), Positives = 149/175 (85%)
 Frame = -2

Query: 713 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIRLLEDFASRKATKDHGYFLALTTLNTIGE 534
           MYLK++LPWNV+I  E+LDAKGL+LQR++IIRLLEDFAS+KATKD GY+LA+TTL +IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 533 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 354
           GKVR+ +G VLFPVVFN ITFK F+GE+L+GVV++V+K GVF+  GP E +++S   MPD
Sbjct: 61  GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120

Query: 353 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 189
           Y YV GENP+F+ND  SKIEKDV +RF+VIGTKW+E EREFQ L SL GD LGPV
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 175


>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  251 bits (640), Expect = 2e-64
 Identities = 120/175 (68%), Positives = 151/175 (86%)
 Frame = -2

Query: 713 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIRLLEDFASRKATKDHGYFLALTTLNTIGE 534
           M+LK++LPWNV+IP ENLDAKGL+LQR++IIRLL++FA++KATKD GYFLA+TTL  IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 533 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 354
           GKVRQ +G VLFPV+F+ ITFK ++GE+L+GVV++V+K GVFL  GP E +++S   MPD
Sbjct: 61  GKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 119

Query: 353 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 189
           Y+YV GENP+F+ND LSKIEKDV +RF+VIGTKW+E EREFQ L SL GD LGPV
Sbjct: 120 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 174


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  247 bits (630), Expect = 3e-63
 Identities = 115/175 (65%), Positives = 148/175 (84%)
 Frame = -2

Query: 713 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIRLLEDFASRKATKDHGYFLALTTLNTIGE 534
           M+LK++LPWNV+IP E LDAKGL+LQR++IIRLL+ F+++KAT++ GYFLA+TTL  IGE
Sbjct: 66  MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 125

Query: 533 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 354
           GKVRQ SG VLFPVVF+C+TFK F+GE+L GVV++V+K GV L  GP E +++S   MPD
Sbjct: 126 GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 185

Query: 353 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 189
           Y+YV GENP+F+N+ LSKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGP+
Sbjct: 186 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 240


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  247 bits (630), Expect = 3e-63
 Identities = 115/175 (65%), Positives = 148/175 (84%)
 Frame = -2

Query: 713 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIRLLEDFASRKATKDHGYFLALTTLNTIGE 534
           M+LK++LPWNV+IP E LDAKGL+LQR++IIRLL+ F+++KAT++ GYFLA+TTL  IGE
Sbjct: 1   MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60

Query: 533 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 354
           GKVRQ SG VLFPVVF+C+TFK F+GE+L GVV++V+K GV L  GP E +++S   MPD
Sbjct: 61  GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 120

Query: 353 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 189
           Y+YV GENP+F+N+ LSKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGP+
Sbjct: 121 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 175


>ref|XP_002312568.1| predicted protein [Populus trichocarpa] gi|222852388|gb|EEE89935.1|
           predicted protein [Populus trichocarpa]
          Length = 176

 Score =  246 bits (629), Expect = 4e-63
 Identities = 114/175 (65%), Positives = 147/175 (84%)
 Frame = -2

Query: 713 MYLKIELPWNVLIPPENLDAKGLLLQRAVIIRLLEDFASRKATKDHGYFLALTTLNTIGE 534
           M+LK++LPWNV+IP ENLDAKGL+LQR++++RLL+DFA + ATKD GY+LA++TL +IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGE 60

Query: 533 GKVRQESGGVLFPVVFNCITFKPFKGEVLKGVVNRVIKQGVFLSSGPTEKVFISATTMPD 354
           GKVRQ +G VLFPVVF+ ITFK F+GE+L G+V++V+K GV L  GP E +++S   MPD
Sbjct: 61  GKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPD 120

Query: 353 YQYVQGENPIFMNDNLSKIEKDVELRFMVIGTKWIENEREFQILGSLFGDCLGPV 189
           Y+YV GENP+F+ND  SKIEKDV +RF+V+GTKW+E EREFQ L SL GD LGPV
Sbjct: 121 YRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 175