BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011822
         (2710 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264021.2| PREDICTED: probable ATP-dependent RNA helica...   374   e-101
ref|XP_002524066.1| ATP-dependent RNA helicase, putative [Ricinu...   371   e-100
emb|CBI39147.3| unnamed protein product [Vitis vinifera]              356   2e-95
ref|NP_850255.1| helicase associated domain-containing protein [...   348   4e-93
gb|AAD21465.1| putative ATP-dependent RNA helicase A [Arabidopsi...   347   1e-92

>ref|XP_002264021.2| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
            vinifera]
          Length = 991

 Score =  374 bits (961), Expect = e-101
 Identities = 204/336 (60%), Positives = 232/336 (69%), Gaps = 7/336 (2%)
 Frame = -2

Query: 2355 MSYRPNNQXXXXXXXXXXXXXXXXXXXXXXXXXXGEQRWWDPVWRAERLRQVRAENPVEV 2176
            MSYRPN Q                          GEQRWWDPVWRAERLRQ  AE  VEV
Sbjct: 1    MSYRPNYQGGRRGAGGRGGGGRRGGGRGGGGGGRGEQRWWDPVWRAERLRQQAAE--VEV 58

Query: 2175 FDENEWWSKLEEMKGGNENEIIVKRNFGRDGQQAMSDIAYQLGLYFHAYNKGRTLVVSKV 1996
             +E+EWW  +E+MK G E E+++KR + R   Q +SD+AYQLGLYFHAYNKG+TLVVSKV
Sbjct: 59   LNEDEWWGTMEQMKRGGEQEMVIKRTYSRGDHQILSDMAYQLGLYFHAYNKGKTLVVSKV 118

Query: 1995 PLPNYRADLDERHGSTQKEIRMSSETEIKVXXXXXXXXXXAPVNGSFSSSI*GEKQTLPA 1816
            PLPNYRADLDERHGSTQKEIRMS+ETEI+V            V G  + S  G K +   
Sbjct: 119  PLPNYRADLDERHGSTQKEIRMSTETEIRVGNLLDSSQEVVTVGGPSAVSSQGVKPSSSG 178

Query: 1815 LDEANSGPLSYIDTAMENLSAELKEKQDKMMANGSSKAMMSFREKLLAYKKKAEFVKAVA 1636
                ++     IDTA E LS ELK+  +KM  + S K M +FREKL A+K K+EF+KAVA
Sbjct: 179  ASITSAVSKLEIDTAKEGLSVELKQNHEKMKGSNSVKMMQAFREKLPAFKMKSEFLKAVA 238

Query: 1635 DNQVLVVSGETGCGKTTQLPQFILEEEISCLRVADCNIICTQPCHISAISVSTRI----- 1471
            DNQVLVVSGET CGKTTQLPQFILEEEIS LR ADCNIICTQP  ISAISV+ RI     
Sbjct: 239  DNQVLVVSGETSCGKTTQLPQFILEEEISSLRGADCNIICTQPRRISAISVAARISSEKG 298

Query: 1470 --IGDMVGYQIRLEAKRSEQTRLLFCTTRVVLRQLV 1369
              +G+ VGYQIRLEAKRS QTRLLFCTT V+LRQLV
Sbjct: 299  ESLGETVGYQIRLEAKRSAQTRLLFCTTGVLLRQLV 334


>ref|XP_002524066.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223536634|gb|EEF38276.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 994

 Score =  371 bits (952), Expect = e-100
 Identities = 205/338 (60%), Positives = 239/338 (70%), Gaps = 9/338 (2%)
 Frame = -2

Query: 2355 MSYRPNNQXXXXXXXXXXXXXXXXXXXXXXXXXXGEQRWWDPVWRAERLRQVRAENPVEV 2176
            MS+RPN Q                          GEQRWWDPVWRAERLRQ  AE  +EV
Sbjct: 1    MSHRPNFQGGRRGGGGGRGGRGRGGGGGRGGGGRGEQRWWDPVWRAERLRQQAAE--MEV 58

Query: 2175 FDENEWWSKLEEMKGGNENEIIVKRNFGRDGQQAMSDIAYQLGLYFHAYNKGRTLVVSKV 1996
             +ENEWW K+E+MK   + E+IVKRN+ R  QQ +SD+AYQLGLYFHAYNKG+ LVVSKV
Sbjct: 59   LNENEWWDKMEKMKNSGDQEMIVKRNYSRTDQQTLSDMAYQLGLYFHAYNKGKALVVSKV 118

Query: 1995 PLPNYRADLDERHGSTQKEIRMSSETEIKVXXXXXXXXXXAPVNGSFSSSI*GEKQTLPA 1816
            PLPNYRADLDERHGS QKEI+MS+ETE +V          APVN S +SS  G+     +
Sbjct: 119  PLPNYRADLDERHGSAQKEIQMSTETEKRVKNLLNCTQREAPVNDSGASS--GQGDNRSS 176

Query: 1815 LDEANSGPLSYI--DTAMENLSAELKEKQDKMMANGSSKAMMSFREKLLAYKKKAEFVKA 1642
                 + P+S I  D+A E LS ELK+++DK MA+ S K M SFREKL A+K K EF+KA
Sbjct: 177  TGPKITKPVSTIETDSAKEKLSLELKQRRDKTMASDSLKEMQSFREKLPAFKMKGEFLKA 236

Query: 1641 VADNQVLVVSGETGCGKTTQLPQFILEEEISCLRVADCNIICTQPCHISAISVSTRI--- 1471
            VA+NQVLV+SGETGCGKTTQLPQ+ILEEEI+ LR ADCNIICTQP  ISAISV+ RI   
Sbjct: 237  VAENQVLVISGETGCGKTTQLPQYILEEEITRLRGADCNIICTQPRRISAISVAARISSE 296

Query: 1470 ----IGDMVGYQIRLEAKRSEQTRLLFCTTRVVLRQLV 1369
                +G+ VGYQIRLEAKRS QT LLFCTT V+LRQLV
Sbjct: 297  RGENLGETVGYQIRLEAKRSAQTHLLFCTTGVLLRQLV 334


>emb|CBI39147.3| unnamed protein product [Vitis vinifera]
          Length = 1356

 Score =  356 bits (914), Expect = 2e-95
 Identities = 212/402 (52%), Positives = 244/402 (60%), Gaps = 43/402 (10%)
 Frame = -2

Query: 2445 SQHIYSSIYKKFPKPFCHLTFSVLSQNTHNMSYRPNNQXXXXXXXXXXXXXXXXXXXXXX 2266
            S+H+ SS     PK F  L F +   +   MSYRPN Q                      
Sbjct: 14   SKHLSSS-----PKEFA-LLFRI---SISTMSYRPNYQGGRRGAGGRGGGGRRGGGRGGG 64

Query: 2265 XXXXGEQRWWDPVWRAERLRQVRAENPVEVFDENEWWSKLEEMKGGNENEIIVKRNFGRD 2086
                GEQRWWDPVWRAERLRQ  AE  VEV +E+EWW  +E+MK G E E+++KR + R 
Sbjct: 65   GGGRGEQRWWDPVWRAERLRQQAAE--VEVLNEDEWWGTMEQMKRGGEQEMVIKRTYSRG 122

Query: 2085 GQQAMSDIAYQLGLYF------------------------------------HAYNKGRT 2014
              Q +SD+AYQLGLY                                     HAYNKG+T
Sbjct: 123  DHQILSDMAYQLGLYLSFFIFFMIGSSQIHWLANLESLLHFHFRLALTGQKSHAYNKGKT 182

Query: 2013 LVVSKVPLPNYRADLDERHGSTQKEIRMSSETEIKVXXXXXXXXXXAPVNGSFSSSI*GE 1834
            LVVSKVPLPNYRADLDERHGSTQKEIRMS+ETEI+V            V G  + S  G 
Sbjct: 183  LVVSKVPLPNYRADLDERHGSTQKEIRMSTETEIRVGNLLDSSQEVVTVGGPSAVSSQGV 242

Query: 1833 KQTLPALDEANSGPLSYIDTAMENLSAELKEKQDKMMANGSSKAMMSFREKLLAYKKKAE 1654
            K +       ++     IDTA E LS ELK+  +KM  + S K M +FREKL A+K K+E
Sbjct: 243  KPSSSGASITSAVSKLEIDTAKEGLSVELKQNHEKMKGSNSVKMMQAFREKLPAFKMKSE 302

Query: 1653 FVKAVADNQVLVVSGETGCGKTTQLPQFILEEEISCLRVADCNIICTQPCHISAISVSTR 1474
            F+KAVADNQVLVVSGET CGKTTQLPQFILEEEIS LR ADCNIICTQP  ISAISV+ R
Sbjct: 303  FLKAVADNQVLVVSGETSCGKTTQLPQFILEEEISSLRGADCNIICTQPRRISAISVAAR 362

Query: 1473 I-------IGDMVGYQIRLEAKRSEQTRLLFCTTRVVLRQLV 1369
            I       +G+ VGYQIRLEAKRS QTRLLFCTT V+LRQLV
Sbjct: 363  ISSEKGESLGETVGYQIRLEAKRSAQTRLLFCTTGVLLRQLV 404


>ref|NP_850255.1| helicase associated domain-containing protein [Arabidopsis thaliana]
            gi|330254083|gb|AEC09177.1| helicase associated
            domain-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  348 bits (893), Expect = 4e-93
 Identities = 188/305 (61%), Positives = 225/305 (73%), Gaps = 11/305 (3%)
 Frame = -2

Query: 2250 EQRWWDPVWRAERLRQVRAENPVEVFDENEWWSKLEEMKGGNENEIIVKRNFGRDGQQAM 2071
            EQRWWDPVWRAERLRQ +AE  +EV DENEWW+K+E+ K G E E+++KRNF R  QQ +
Sbjct: 39   EQRWWDPVWRAERLRQQQAE--MEVLDENEWWNKIEQWKTGGEQEMLIKRNFSRGDQQTL 96

Query: 2070 SDIAYQLGLYFHAYNKGRTLVVSKVPLPNYRADLDERHGSTQKEIRMSSETEIKVXXXXX 1891
            SD+A Q+GLYFHAYNKG+ LVVSKVPLP+YRADLDERHGSTQKEI+MS+ETE K+     
Sbjct: 97   SDMALQMGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIKMSTETERKLGSLLK 156

Query: 1890 XXXXXAPVNGSFSSSI*GEKQT----LPALDEANSGPLSYIDTAMENLSAELKEKQDKMM 1723
                      S S+    + +T    L   D A+  P S      E  S  LKE+Q+K+ 
Sbjct: 157  TTQESGSSGASASAFNDQQDRTSTLGLKRPDSASKLPDS---LEKEKFSFALKERQEKLK 213

Query: 1722 ANGSSKAMMSFREKLLAYKKKAEFVKAVADNQVLVVSGETGCGKTTQLPQFILEEEISCL 1543
            A  S KA+ +FREKL A+K K EF+ +V+ NQVLVVSGETGCGKTTQLPQFILEEEIS L
Sbjct: 214  ATESVKALKAFREKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSL 273

Query: 1542 RVADCNIICTQPCHISAISVSTRI-------IGDMVGYQIRLEAKRSEQTRLLFCTTRVV 1384
            R ADCNIICTQP  ISAISV++RI       IG+ VGYQIRLE+KRS+QTRLLFCTT V+
Sbjct: 274  RGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVL 333

Query: 1383 LRQLV 1369
            LR+L+
Sbjct: 334  LRRLI 338


>gb|AAD21465.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana]
          Length = 993

 Score =  347 bits (890), Expect = 1e-92
 Identities = 188/304 (61%), Positives = 224/304 (73%), Gaps = 11/304 (3%)
 Frame = -2

Query: 2250 EQRWWDPVWRAERLRQVRAENPVEVFDENEWWSKLEEMKGGNENEIIVKRNFGRDGQQAM 2071
            EQRWWDPVWRAERLRQ +AE  +EV DENEWW+K+E+ K G E E+++KRNF R  QQ +
Sbjct: 39   EQRWWDPVWRAERLRQQQAE--MEVLDENEWWNKIEQWKTGGEQEMLIKRNFSRGDQQTL 96

Query: 2070 SDIAYQLGLYFHAYNKGRTLVVSKVPLPNYRADLDERHGSTQKEIRMSSETEIKVXXXXX 1891
            SD+A Q+GLYFHAYNKG+ LVVSKVPLP+YRADLDERHGSTQKEI+MS+ETE K+     
Sbjct: 97   SDMALQMGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIKMSTETERKLGSLLK 156

Query: 1890 XXXXXAPVNGSFSSSI*GEKQT----LPALDEANSGPLSYIDTAMENLSAELKEKQDKMM 1723
                      S S+    + +T    L   D A+  P S      E  S  LKE+Q+K+ 
Sbjct: 157  TTQESGSSGASASAFNDQQDRTSTLGLKRPDSASKLPDS---LEKEKFSFALKERQEKLK 213

Query: 1722 ANGSSKAMMSFREKLLAYKKKAEFVKAVADNQVLVVSGETGCGKTTQLPQFILEEEISCL 1543
            A  S KA+ +FREKL A+K K EF+ +V+ NQVLVVSGETGCGKTTQLPQFILEEEIS L
Sbjct: 214  ATESVKALKAFREKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSL 273

Query: 1542 RVADCNIICTQPCHISAISVSTRI-------IGDMVGYQIRLEAKRSEQTRLLFCTTRVV 1384
            R ADCNIICTQP  ISAISV++RI       IG+ VGYQIRLE+KRS+QTRLLFCTT V+
Sbjct: 274  RGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVL 333

Query: 1383 LRQL 1372
            LR+L
Sbjct: 334  LRRL 337