BLASTX nr result

ID: Coptis25_contig00011793 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011793
         (1162 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003400283.1| PREDICTED: splicing factor 3B subunit 4-like...    61   5e-07
ref|XP_003704241.1| PREDICTED: splicing factor 3B subunit 4-like...    60   1e-06
ref|XP_003517725.1| PREDICTED: proline-rich receptor-like protei...    59   2e-06
gb|ABF70054.1| protein kinase family protein [Musa acuminata]          59   2e-06
ref|YP_005609699.1| hypothetical protein BJ6T_48490 [Bradyrhizob...    59   3e-06

>ref|XP_003400283.1| PREDICTED: splicing factor 3B subunit 4-like [Bombus terrestris]
          Length = 413

 Score = 61.2 bits (147), Expect = 5e-07
 Identities = 44/118 (37%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
 Frame = -2

Query: 1083 PCSHCGASFSHAPVPAFVPQPVS--PPNSESPAP----SMLTHPPRQSPCRRPSVAPSPV 922
            P S  G    H P P   P P S  PP S  P P    SM THPP   P   P + P PV
Sbjct: 252  PPSTPGPPMGHPPPPPVPPPPSSGFPPASIPPPPLPPMSMATHPPLP-PGMPPPLPPMPV 310

Query: 921  PTSYSERSAPPSF---PPH-AISPLPLGRMPKVALDFPPTPAASHGTSPNHDGKVKPP 760
            PTS S+++ P      PPH  +S  P G+ P      PP P+++    P   G+ +PP
Sbjct: 311  PTSQSQQTTPRMMAPPPPHWGVSGPPQGQFPP-----PPPPSSTGAPPPPQFGQFQPP 363


>ref|XP_003704241.1| PREDICTED: splicing factor 3B subunit 4-like [Megachile rotundata]
          Length = 413

 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
 Frame = -2

Query: 1083 PCSHCGASFSHAPVPAFVPQPVS--PPNSESPAP----SMLTHPPRQSPCRRPSVAPSPV 922
            P S  G    H P P   P P S  PP S  P P    SM THPP   P   P + P PV
Sbjct: 252  PPSTPGPPMGHPPPPPVPPPPSSGFPPASIPPPPLPPMSMATHPPLP-PGMPPPLPPMPV 310

Query: 921  PTSYSERSAPPSF---PPH-AISPLPLGRMPKVALDFPPTPAASHGTSPNHDGKVKPP 760
            PTS ++++ P      PPH  +S  P G+ P      PP P+++    P   G+ +PP
Sbjct: 311  PTSQAQQTTPRMMAPPPPHWGVSGPPQGQFPP-----PPPPSSTGAPPPPQFGQFQPP 363


>ref|XP_003517725.1| PREDICTED: proline-rich receptor-like protein kinase PERK13-like
            [Glycine max]
          Length = 686

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 44/131 (33%), Positives = 58/131 (44%), Gaps = 32/131 (24%)
 Frame = -2

Query: 1056 SHAPVPAFVPQPVSPPNSESPAPSMLTHPPRQSPCRRPSVAPSPVPTSY---SERSAPPS 886
            S  P P+  P P +PP+S  P+PS  T PP +SP   PS + SP P S    S+ SAPP 
Sbjct: 69   SSPPTPSQSPPP-TPPHSPPPSPSPPTPPPEKSP---PSPSNSPPPPSTPPPSKDSAPPP 124

Query: 885  FP----------------------PHAISPLPLGRMPKVALDFPPTPA-------ASHGT 793
             P                      P +++P P    P  A+  PP+PA       A  G+
Sbjct: 125  SPSEPPPSPPPSPPPPPPQNSPPSPQSLTPPPHSLSPPTAISTPPSPASHVTPPPAPLGS 184

Query: 792  SPNHDGKVKPP 760
             PNH    +PP
Sbjct: 185  GPNHPSPPRPP 195


>gb|ABF70054.1| protein kinase family protein [Musa acuminata]
          Length = 648

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 38/108 (35%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
 Frame = -2

Query: 1047 PVPAFVPQPVSPPNSESPAPSMLTHPPRQSPCRRPSVAPSPV------------PTSYSE 904
            PV    P P  PP S SP P  L+ PP  +P R PS +P P             P + S 
Sbjct: 66   PVVTSPPPPAPPPPSVSPPPPALSPPPASTPPRPPSASPPPAAAPPPPPPSATPPPTNSP 125

Query: 903  RSAPPSFPPHAISPLPLGRMPKVALDFPPTPAASHGTSPNHDGKVKPP 760
               P + PP  ISP P G         PP PA S+ T        KPP
Sbjct: 126  PPPPSATPPPTISPPPPGSQS------PPAPAPSNSTGGTPPAPPKPP 167


>ref|YP_005609699.1| hypothetical protein BJ6T_48490 [Bradyrhizobium japonicum USDA 6]
            gi|354957432|dbj|BAL10111.1| hypothetical protein
            BJ6T_48490 [Bradyrhizobium japonicum USDA 6]
          Length = 836

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 32/96 (33%), Positives = 40/96 (41%)
 Frame = -2

Query: 1047 PVPAFVPQPVSPPNSESPAPSMLTHPPRQSPCRRPSVAPSPVPTSYSERSAPPSFPPHAI 868
            P P+   +PV P NS +  P+    P   +P  RP     P P   + RSAP   PPH  
Sbjct: 700  PSPSAAREPVKPQNSPATPPAQAARPSPSAPASRPQAVARPTPPPPAARSAP---PPHVA 756

Query: 867  SPLPLGRMPKVALDFPPTPAASHGTSPNHDGKVKPP 760
            SP P    P VA+  P  P  +    P       PP
Sbjct: 757  SPPPARAAPPVAVARPAPPPVARPAPPPMARPAPPP 792


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