BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011769
         (1682 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi...   758   0.0  
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi...   714   0.0  
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ...   672   0.0  
emb|CBI26320.3| unnamed protein product [Vitis vinifera]              592   e-166
gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sat...   486   e-135

>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like
            [Vitis vinifera]
          Length = 590

 Score =  758 bits (1957), Expect = 0.0
 Identities = 365/560 (65%), Positives = 446/560 (79%)
 Frame = -2

Query: 1681 PIFTHPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQ 1502
            P   HPT+ LL+KCKTL +LKQ+HA MITT LI HTYP                 +IFN 
Sbjct: 6    PSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNH 65

Query: 1501 ISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHPWLY 1322
            I NP+IFLYNTLISS  N   HTHIAFSLYS++LTH +LKP  FT+PSL KA  S PWL 
Sbjct: 66   IPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLR 125

Query: 1321 YGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLVTWNTILSAY 1142
            +G+ LHTH+LKFL P+ D FVQA+LLN+Y+KCG +   RYLF+QI++PDL +WN+ILSAY
Sbjct: 126  HGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAY 185

Query: 1141 AKXXXXXXSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAHAY 962
                      ED SLS+E L LF EMQ SL + NE TLVALI ACA LG  +QG WAH Y
Sbjct: 186  VHNSGAIC--EDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVY 243

Query: 961  ILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSRGA 782
            +L++NL+LN FV TALI+ Y+KCGCL+LA Q+F++   +DTLCYNAMIGGFAIHG    A
Sbjct: 244  VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 303

Query: 781  LDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCLVD 602
            LD+F +M  +G+ PDD+TL+V M +C+H GLV++G  +F +MK+ YG+EPKLEHYGCLVD
Sbjct: 304  LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVD 363

Query: 601  LLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETSGN 422
            LLGRAG+L EA+E + +MPM+PNAV+WRSLLGA+RVHGNLE+G++ LK+LI+LEPETSGN
Sbjct: 364  LLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGN 423

Query: 421  YVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSKEI 242
            YVLLSNMYAS+N+WDDV++VR++MKD G+NK PGSS VE+GGA+HEF++GDKTHP SKEI
Sbjct: 424  YVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEI 483

Query: 241  YMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPIRI 62
            Y+KLEEM+R+LH YGH     EVLFDIEEEEKEDAL+YHSE+LAIAFALIAS+   PIRI
Sbjct: 484  YLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRI 543

Query: 61   IKNLRVCYDCHASTKLISKI 2
            IKNLRVC DCH S+KLISKI
Sbjct: 544  IKNLRVCGDCHTSSKLISKI 563


>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like
            [Glycine max]
          Length = 591

 Score =  714 bits (1844), Expect = 0.0
 Identities = 345/557 (61%), Positives = 429/557 (77%), Gaps = 3/557 (0%)
 Frame = -2

Query: 1669 HPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQISNP 1490
            HP +  LQKC  L +LKQ+HA M+TT L   TY                  TIFN I NP
Sbjct: 6    HPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFTIFNHIPNP 65

Query: 1489 SIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHPWLYYGKP 1310
            ++FLYNTLISS T++    H+AFSLY+ ILTH +L+P  FT+PSL KA  SHPWL +G P
Sbjct: 66   TLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPP 125

Query: 1309 LHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLVTWNTILSAYAKXX 1130
            LH H+LKFL P YD FVQ SLLNFY+K G L VSRYLFDQI+EPDL TWNT+L+AYA+  
Sbjct: 126  LHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSA 185

Query: 1129 XXXXSN---EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAHAYI 959
                 +   ED  +S+E L LF +MQ+S  +PNE TLVALI AC+NLG  +QG WAH Y+
Sbjct: 186  SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYV 245

Query: 958  LRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSRGAL 779
            LRNNL+LNRFV TAL++ Y+KCGCLNLA Q+F+    +DT CYNAMIGGFA+HG    AL
Sbjct: 246  LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQAL 305

Query: 778  DVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCLVDL 599
            +++  M+ + + PD  T++V M+AC+H GLV++G  IF +MK  +G+EPKLEHYGCL+DL
Sbjct: 306  ELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDL 365

Query: 598  LGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETSGNY 419
            LGRAG+L+EA+E ++DMPM+PNA++WRSLLGA+++HGNLE+G+ ALK+LIELEPETSGNY
Sbjct: 366  LGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNY 425

Query: 418  VLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSKEIY 239
            VLLSNMYAS+ +W+DV++VR +MKD GV+K PG S VEI GA+HEF+ GDK HP SKEIY
Sbjct: 426  VLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIY 485

Query: 238  MKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPIRII 59
             K+ E+NR+L  YGH     EVLFD+EEE+KED L+YHSE+LAIAFALIAS+SS PIRII
Sbjct: 486  SKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRII 545

Query: 58   KNLRVCYDCHASTKLIS 8
            KNLRVC DCHA TKLIS
Sbjct: 546  KNLRVCGDCHAITKLIS 562


>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484374|gb|AES65577.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  672 bits (1733), Expect = 0.0
 Identities = 333/566 (58%), Positives = 423/566 (74%), Gaps = 9/566 (1%)
 Frame = -2

Query: 1678 IFTHPTILLLQ-KCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQ 1502
            IF HPT+  LQ KC    +LKQIH  +ITT L   TY                   IFN 
Sbjct: 146  IFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFNLPYAFKIFNY 205

Query: 1501 ISNPSIFLYNTLISSFTN--NPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHP- 1331
            ISNP+IFLYNTLISS  N  N +  H+AFSLY++ILT+ +L+P  FT+PSL KA CS+  
Sbjct: 206  ISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQS 265

Query: 1330 WLYYGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLVTWNTIL 1151
            W +YG  LHTH+LKFL P +D+FVQASLLNFY+K G + VSRY+FD+I EPDL TWN IL
Sbjct: 266  WFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVIL 325

Query: 1150 SAYAKXXXXXXSN---EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQG 980
            +AYA+       +   +D   S+E+L+LF +MQV   RPNE T+VALI AC+NLG  +QG
Sbjct: 326  NAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQG 385

Query: 979  TWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVR--KDTLCYNAMIGGFA 806
             W H ++LRN +++NRFV TA ++ Y+KCGCLNLA QVF++     +D+ CY AMIGGFA
Sbjct: 386  FWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFA 445

Query: 805  IHGQSRGALDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKL 626
            +HG    AL+++ +M+  G+ PD  T +V M+AC+H GLV++G  IF +MK+ +G+EPKL
Sbjct: 446  VHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKL 505

Query: 625  EHYGCLVDLLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIE 446
            EHYGCL+DLLGRAG+L+EA+E + DMPM+PNAV+WRSLLGA+R+HGNL +G++AL  LIE
Sbjct: 506  EHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIE 565

Query: 445  LEPETSGNYVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDK 266
            LEPETSGNYVLLSNMYASV + +DV++VR++MK  GVNK PG S VEI GA+HEF+ GD+
Sbjct: 566  LEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDR 625

Query: 265  THPHSKEIYMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIAS 86
            +HP SKEIY+K+ E+N +L  YGH A   E LFD+EEE+KE  L+YHSE+LAIAFALIAS
Sbjct: 626  SHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIAS 685

Query: 85   NSSGPIRIIKNLRVCYDCHASTKLIS 8
             SS  IRIIKNLRVC DCHA TKLIS
Sbjct: 686  PSSLAIRIIKNLRVCGDCHAFTKLIS 711


>emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  592 bits (1526), Expect = e-166
 Identities = 309/560 (55%), Positives = 378/560 (67%)
 Frame = -2

Query: 1681 PIFTHPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQ 1502
            P   HPT+ LL+KCKTL +LKQ+HA MITT LI HTYP                 +IFN 
Sbjct: 6    PSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNH 65

Query: 1501 ISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHPWLY 1322
            I NP+IFLYNTLISS  N                    +KP                   
Sbjct: 66   IPNPTIFLYNTLISSLAN--------------------IKP------------------- 86

Query: 1321 YGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLVTWNTILSAY 1142
                 HTHI   L                        SR L     +P+  T+ ++  A 
Sbjct: 87   -----HTHIAFSLY-----------------------SRVLTHTTLKPNGFTFPSLFKAC 118

Query: 1141 AKXXXXXXSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAHAY 962
                       D  L    L LF EMQ SL + NE TLVALI ACA LG  +QG WAH Y
Sbjct: 119  GSQPWL---RHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVY 175

Query: 961  ILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSRGA 782
            +L++NL+LN FV TALI+ Y+KCGCL+LA Q+F++   +DTLCYNAMIGGFAIHG    A
Sbjct: 176  VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 235

Query: 781  LDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCLVD 602
            LD+F +M  +G+ PDD+TL+V M +C+H GLV++G  +F +MK+ YG+EPKLEHYGCLVD
Sbjct: 236  LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVD 295

Query: 601  LLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETSGN 422
            LLGRAG+L EA+E + +MPM+PNAV+WRSLLGA+RVHGNLE+G++ LK+LI+LEPETSGN
Sbjct: 296  LLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGN 355

Query: 421  YVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSKEI 242
            YVLLSNMYAS+N+WDDV++VR++MKD G+NK PGSS VE+GGA+HEF++GDKTHP SKEI
Sbjct: 356  YVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEI 415

Query: 241  YMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPIRI 62
            Y+KLEEM+R+LH YGH     EVLFDIEEEEKEDAL+YHSE+LAIAFALIAS+   PIRI
Sbjct: 416  YLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRI 475

Query: 61   IKNLRVCYDCHASTKLISKI 2
            IKNLRVC DCH S+KLISKI
Sbjct: 476  IKNLRVCGDCHTSSKLISKI 495


>gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 624

 Score =  486 bits (1252), Expect = e-135
 Identities = 251/504 (49%), Positives = 341/504 (67%), Gaps = 7/504 (1%)
 Frame = -2

Query: 1492 PSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNS----LKPTCFTYPSLLKASCSHPWL 1325
            P+ FL N+ + + +++P     A SLY+ +   +S    L+P  FTYP L +A+   P L
Sbjct: 100  PTTFLANSFLLA-SSSPGCLPSALSLYALLFLSSSSPPLLRPNAFTYPPLFRAA--PPAL 156

Query: 1324 YYGKPLHTHILKFL---VPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLVTWNTI 1154
                 L TH +KFL     S D  + A+LL+ +++CG +   R +FD+I  PDL  WN +
Sbjct: 157  ALA--LATHSIKFLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNAL 214

Query: 1153 LSAYAKXXXXXXSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTW 974
            LSAYA+      +   +S +   L +F  M     +PNE TLVA+IGAC  LG  + G W
Sbjct: 215  LSAYARLRARDVACA-SSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVW 273

Query: 973  AHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQ 794
            AH Y ++  L +N  VATAL+E YA CG L+LA+QVF  A  +DT CYNAM+ G A+HG 
Sbjct: 274  AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 333

Query: 793  SRGALDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYG 614
             R AL +FDRM  +GV  D +T+L VM ACAHAGLV +G   F+ M+ E+GIEP +EHYG
Sbjct: 334  GRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 393

Query: 613  CLVDLLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPE 434
            C+VD+L RAG+L +A++ I  MP+ PNA ++RSL+ A  +HG LELG+  +  L+ LEP+
Sbjct: 394  CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 453

Query: 433  TSGNYVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPH 254
             SGN+VL+SN YA+ N+WDD +K R+ MK  G++K+PGSSFV+I G +HEF++GDKTHP 
Sbjct: 454  DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 513

Query: 253  SKEIYMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSG 74
            SKEIY  +E++  +L   GH +S    LFD+EEE+K DAL+YHSE+LAIAFALIASN   
Sbjct: 514  SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 573

Query: 73   PIRIIKNLRVCYDCHASTKLISKI 2
            PIRIIKNLRVC DCH S KL+S++
Sbjct: 574  PIRIIKNLRVCADCHESAKLVSRV 597