BLASTX nr result

ID: Coptis25_contig00011763 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011763
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12304.1| 6b-interacting protein 2 [Nicotiana tabacum]           90   6e-16
emb|CAN80204.1| hypothetical protein VITISV_030060 [Vitis vinifera]    88   3e-15
ref|XP_002328708.1| predicted protein [Populus trichocarpa] gi|2...    87   7e-15
emb|CAN67156.1| hypothetical protein VITISV_039492 [Vitis vinifera]    86   1e-14
gb|AAP53710.2| transposon protein, putative, CACTA, En/Spm sub-c...    82   1e-13

>dbj|BAG12304.1| 6b-interacting protein 2 [Nicotiana tabacum]
          Length = 424

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 5/196 (2%)
 Frame = -2

Query: 587 PSGKKFI-EFDADGQPVGDNSSSYSSTLGGIAKT--HCPIFYESFTNVPDQTKNAIW-KS 420
           P GKK + E++   QPVG+++      LG IA    + PI +E +  +P   K  +W  +
Sbjct: 78  PMGKKVVLEWNNRNQPVGESAGLLGGFLGSIASNFEYFPIGFEKWPKIPKPYKEHVWTNT 137

Query: 419 IKKEYHVSDTY-RKCQLKKIGKSFREYKHRLRVKHYDKYKNDDERKRNCPKGVKQDEWER 243
           IK ++ V+D   +K  L  IG+ +R+ + +L  ++YD     D      P G+ +D+W  
Sbjct: 138 IKPKFQVNDEMNKKYILGNIGRKWRDKRIKLFDENYDPSLGKDANIDLPPAGISKDQWAL 197

Query: 242 FVDNESKPFRKRMRLIGKKSRQAVKSLHTSGRRGSARTIHELKKRNPGAKFTRTDSYIAI 63
           F++         +    + +RQ     H  G R  ART+HEL+ +  G  +TR   Y   
Sbjct: 198 FLNYRLNEKTMEISCKNRVNRQKQTVPHILGSRSIARTMHELEIK-AGRPYTRGQMYSIA 256

Query: 62  HTRKDGSFIAPERMAR 15
           H +KDGSF+  E   R
Sbjct: 257 HKKKDGSFVNDEARQR 272


>emb|CAN80204.1| hypothetical protein VITISV_030060 [Vitis vinifera]
          Length = 474

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
 Frame = -2

Query: 569 IEFDADGQPVGDNSSSYSSTLGGIAKTHCPIFYESFTNVPDQTKNAIWKSIKKEYHVSDT 390
           IE+++ G  +G+NS   SS LG I +TH PI  ES+  VP +TK  +W  I   ++V+  
Sbjct: 34  IEYNSLGSHIGENSVELSSYLGTITRTHVPIIVESWRKVPKETKEKLWDLITTSFNVNQN 93

Query: 389 YRKCQLKKIGKSFREYKHRLRVKHYDKYKNDDERKRNCP---KGVKQDEWERFVDNESKP 219
            ++     +G  FR +K++L  K+   +KND E+ +  P     +++D W +FV +    
Sbjct: 94  SKRNCFLLMGIRFRTFKYKLTKKYILPFKNDPEKLKKPPPIYPFIQEDHWRQFVKDRLSE 153

Query: 218 FRKRMRLIGKKSRQAVKSLHTSGRRGSARTIHELKKRNPGAKFT 87
                R + K  R      H  GR+G AR   ++ +    AK T
Sbjct: 154 HFNEYRKVQKXRRDKHIYNHYLGRKGYARFEQDIDELLENAKET 197


>ref|XP_002328708.1| predicted protein [Populus trichocarpa] gi|222839006|gb|EEE77357.1|
           predicted protein [Populus trichocarpa]
          Length = 327

 Score = 86.7 bits (213), Expect = 7e-15
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
 Frame = -2

Query: 551 GQPVGDNSSSYSSTLGGIAKTH--CPIFYESFTNVPDQTKNAIWKSIKKEYHVSDTYRKC 378
           GQPVG  +S  S+ LG +A+     P+ +  +  +PD+ K  +W+ ++ ++ +    +  
Sbjct: 18  GQPVGPEASKLSTFLGTVARNGEMAPLTFVDWFAMPDEKKENMWQFVQTKFDIEPVCKTW 77

Query: 377 QLKKIGKSFREYKHRLRVKHYDKYKNDDERKRNCPKGVKQDEWERFVDNESKPFRKRMRL 198
            L+ +   +R +K +L+ +HY  +K D+ER  +  + V  ++W   +   +    +    
Sbjct: 78  VLRSLASKWRNWKAKLKSEHYYPHKTDEERLNDRDRRVLPEQWAILISYWNSEEAQLRSA 137

Query: 197 IGKKSRQAVKSLHTSGRRGSARTIHELK-KRNPGAKFTRTDSYIAIHTRKDG 45
             K +R   KS HT+G +  AR   E + K++ G + TR + YI   TRKDG
Sbjct: 138 KNKANRSNQKSTHTAGSKSFARIREEERTKKSGGKEPTRAELYIKTRTRKDG 189


>emb|CAN67156.1| hypothetical protein VITISV_039492 [Vitis vinifera]
          Length = 653

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = -2

Query: 569 IEFDADGQPVGDNSSSYSSTLGGIAKTHCPIFYESFTNVPDQTKNAIWKSIKKEYHVSDT 390
           IE+++ G  +G+NS   SS LG I +TH PI  ES+  VP +TK  +W  I   ++V+  
Sbjct: 34  IEYNSLGSHIGENSVELSSYLGTITRTHVPIIVESWRKVPKETKEKLWDLITTSFNVNQN 93

Query: 389 YRKCQLKKIGKSFREYKHRLRVKHYDKYKNDDERKRNCP---KGVKQDEWERFVDNESKP 219
            ++     +G  FR +K+ L  K+   +KND E+ +  P     +++D W +FV +    
Sbjct: 94  SKRNCFLLMGIRFRTFKYMLTKKYILPFKNDPEKLKKPPPIYPFIQEDHWRQFVKDRLSE 153

Query: 218 FRKRMRLIGKKSRQAVKSLHTSGRRGSARTIHELKKRNPG 99
                R + K  R      H  GR+G AR   ++ +   G
Sbjct: 154 HFNEYRKVQKSRRDKHIYNHYLGRKGYARFEQDILQAEGG 193


>gb|AAP53710.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
            Japonica Group]
          Length = 1486

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 46/176 (26%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
 Frame = -2

Query: 569  IEFDADGQPVGDNSSSYSSTLGGIAKTHC-PIFYESFTNVPDQTKNAIWKSIKKEYHVSD 393
            ++++   QPVG  +S  ++ +G +AK     + YE +T+VP+  K+ +W ++K+ + + +
Sbjct: 1010 VDYNEHFQPVGPYASKLANVIGNLAKGKVLSLAYEDWTDVPN--KDDVWDNVKRYFDLDE 1067

Query: 392  TYRKCQLKKIGKSFREYKHRLRVKHYDKYKNDDERKRNCPKGVKQDEWERFVDNESKPFR 213
              ++  ++   K ++++K+RL+ K++D  K + E  +     +    W+  V        
Sbjct: 1068 CLKEYVMRSAHKKWKDFKNRLKAKYFDPEKTNKELWKKHDSRISLKVWKWLVCFWRSEKG 1127

Query: 212  KRMRLIGKKSRQAVKSLHTSGRRGSARTIHELKKRNPGAKFTRTDSYIAIHTRKDG 45
            K     GK +R  + ++HT G R  A   H+++KR  G K +R + +   +TRKDG
Sbjct: 1128 KARSNRGKANRAKMVAVHTIGTRSLANVRHDMEKRK-GRKVSRAEVFKVAYTRKDG 1182


Top