BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011717
         (1654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vi...   498   e-156
emb|CBI37850.3| unnamed protein product [Vitis vinifera]              498   e-156
ref|XP_002516388.1| splicing factor, putative [Ricinus communis]...   474   e-148
ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glyc...   463   e-146
ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glyc...   454   e-142

>ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vitis vinifera]
          Length = 609

 Score =  498 bits (1282), Expect(2) = e-156
 Identities = 261/363 (71%), Positives = 287/363 (79%), Gaps = 3/363 (0%)
 Frame = +3

Query: 213  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 392
            VRDVRLIMDRNSRRSKGVGYIEFYD MSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 245  VRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 304

Query: 393  TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLD-ESGHCK 566
            TA               ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLP D E+GHCK
Sbjct: 305  TAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCK 364

Query: 567  GFGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEIGVNAXXXXXXXXXXMS 746
            GFGFVQFARLEDAR AQ+LNGQLDIAGRTIKVS V+DQ G+Q+IG NA          +S
Sbjct: 365  GFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDIGANAGDFDDDEGGGLS 424

Query: 747  LNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGM-PSTIPIVXXXXXX 923
            LNARSRAILMQKLDRSG    I GS+ +PVLN  GLPL+TA + G  P   P+V      
Sbjct: 425  LNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVSPLVAPLVQA 484

Query: 924  XXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLDIKEDVQAE 1103
                      +   VP VT  SID IG+PSECL+LK+MFDP +ETEPDFDLDIKEDVQ E
Sbjct: 485  PVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDLDIKEDVQDE 544

Query: 1104 CSKFGLVKHIYVDKHSAGFVYLQFDNTQSAMNAQRALHGRWFAGKMITASYMVPQNYEAK 1283
            CSKFG VKHIYVDK+SAGFV+L+F+NTQ+A++AQRALHGRWFAGKMITA++M+PQNYEAK
Sbjct: 545  CSKFGTVKHIYVDKNSAGFVFLRFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAK 604

Query: 1284 FPD 1292
            FPD
Sbjct: 605  FPD 607



 Score = 82.4 bits (202), Expect(2) = e-156
 Identities = 40/47 (85%), Positives = 45/47 (95%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   RRYKEKKEEV-EPEADPERDQRTVFAYQISLKADEKDVFQFFSRAGK 138
           RR+K+KKEEV EPEADPERDQRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 198 RRHKDKKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGK 244


>emb|CBI37850.3| unnamed protein product [Vitis vinifera]
          Length = 427

 Score =  498 bits (1282), Expect(2) = e-156
 Identities = 261/363 (71%), Positives = 287/363 (79%), Gaps = 3/363 (0%)
 Frame = +3

Query: 213  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 392
            VRDVRLIMDRNSRRSKGVGYIEFYD MSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 63   VRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 122

Query: 393  TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLD-ESGHCK 566
            TA               ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLP D E+GHCK
Sbjct: 123  TAAAGGPGGLIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGTVELVQLPTDLETGHCK 182

Query: 567  GFGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEIGVNAXXXXXXXXXXMS 746
            GFGFVQFARLEDAR AQ+LNGQLDIAGRTIKVS V+DQ G+Q+IG NA          +S
Sbjct: 183  GFGFVQFARLEDARAAQSLNGQLDIAGRTIKVSVVTDQAGLQDIGANAGDFDDDEGGGLS 242

Query: 747  LNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGM-PSTIPIVXXXXXX 923
            LNARSRAILMQKLDRSG    I GS+ +PVLN  GLPL+TA + G  P   P+V      
Sbjct: 243  LNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVSPLVAPLVQA 302

Query: 924  XXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLDIKEDVQAE 1103
                      +   VP VT  SID IG+PSECL+LK+MFDP +ETEPDFDLDIKEDVQ E
Sbjct: 303  PVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDLDIKEDVQDE 362

Query: 1104 CSKFGLVKHIYVDKHSAGFVYLQFDNTQSAMNAQRALHGRWFAGKMITASYMVPQNYEAK 1283
            CSKFG VKHIYVDK+SAGFV+L+F+NTQ+A++AQRALHGRWFAGKMITA++M+PQNYEAK
Sbjct: 363  CSKFGTVKHIYVDKNSAGFVFLRFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAK 422

Query: 1284 FPD 1292
            FPD
Sbjct: 423  FPD 425



 Score = 82.4 bits (202), Expect(2) = e-156
 Identities = 40/47 (85%), Positives = 45/47 (95%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   RRYKEKKEEV-EPEADPERDQRTVFAYQISLKADEKDVFQFFSRAGK 138
           RR+K+KKEEV EPEADPERDQRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 16  RRHKDKKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGK 62


>ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
            gi|223544486|gb|EEF46005.1| splicing factor, putative
            [Ricinus communis]
          Length = 609

 Score =  474 bits (1219), Expect(2) = e-148
 Identities = 255/361 (70%), Positives = 282/361 (78%), Gaps = 1/361 (0%)
 Frame = +3

Query: 213  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 392
            VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 252  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 311

Query: 393  TAVVXXXXXXXXXXXXARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKGF 572
            T V             ARRLYVGNLHFNITEDQLRQVFEPFG VELVQLPLDE+GHCKGF
Sbjct: 312  TTV---NAGSGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGIVELVQLPLDETGHCKGF 368

Query: 573  GFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEIGVNAXXXXXXXXXXMSLN 752
            GFVQFARLEDA+NA NLNGQ++IAGR IKVS V+DQ GMQ+   NA          ++LN
Sbjct: 369  GFVQFARLEDAKNALNLNGQVEIAGRPIKVSTVTDQTGMQDSTTNAGDFDDDEGGGLALN 428

Query: 753  ARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTI-PIVXXXXXXXX 929
            ARSRAILMQKLDRSG  SSI GS+ T   + +GL + TA + G    I PIV        
Sbjct: 429  ARSRAILMQKLDRSGTASSIAGSLGTSAAS-TGLAVPTAPILGAAPVIPPIVAPLISGSA 487

Query: 930  XXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLDIKEDVQAECS 1109
                    +S  +P     S+D IG+PSECLLLK+MFDPSIETEPDFDLDIKEDVQ ECS
Sbjct: 488  PAFPGLPGASVQLPG-AIPSVDTIGVPSECLLLKNMFDPSIETEPDFDLDIKEDVQLECS 546

Query: 1110 KFGLVKHIYVDKHSAGFVYLQFDNTQSAMNAQRALHGRWFAGKMITASYMVPQNYEAKFP 1289
            KFG ++HIYVDK+SAGFVYL+F+NTQSA++AQRALHGRWFAGKMITA++MVPQ YE KFP
Sbjct: 547  KFGNLQHIYVDKNSAGFVYLRFENTQSAISAQRALHGRWFAGKMITATFMVPQVYETKFP 606

Query: 1290 D 1292
            D
Sbjct: 607  D 607



 Score = 79.3 bits (194), Expect(2) = e-148
 Identities = 41/48 (85%), Positives = 44/48 (91%), Gaps = 2/48 (4%)
 Frame = +1

Query: 1   RRY-KEKKEEV-EPEADPERDQRTVFAYQISLKADEKDVFQFFSRAGK 138
           RRY KEKKEE  EPEADPERDQRTVFAYQI LKADE+DV++FFSRAGK
Sbjct: 204 RRYNKEKKEEAAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGK 251


>ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
          Length = 597

 Score =  463 bits (1191), Expect(2) = e-146
 Identities = 248/361 (68%), Positives = 278/361 (77%), Gaps = 1/361 (0%)
 Frame = +3

Query: 213  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 392
            VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 249  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 308

Query: 393  TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKG 569
            T+V              AR+LYVGNLH +ITE  +R+VFE FG VELVQLPLDESGHCKG
Sbjct: 309  TSVANGLTGLIGPYSGGARKLYVGNLHVSITEADIRRVFEAFGQVELVQLPLDESGHCKG 368

Query: 570  FGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEIGVNAXXXXXXXXXXMSL 749
            FGFVQFARLEDARNAQ+LNGQL+I GRTIKVSAV+DQ GMQE+G N           +SL
Sbjct: 369  FGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSL 428

Query: 750  NARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTIPIVXXXXXXXX 929
            NA SRAILMQKLDRSG  SS+ GS+    +N +GL L        P+T  I+        
Sbjct: 429  NACSRAILMQKLDRSGTASSMVGSIGNSGVNNTGLNL--------PATGNILAAAPVGGL 480

Query: 930  XXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLDIKEDVQAECS 1109
                        +PT T  SIDPIG+PSECL+LK+MFDP  ETEPDFDLDIKEDV+AECS
Sbjct: 481  AG------GGLQIPTATIPSIDPIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECS 534

Query: 1110 KFGLVKHIYVDKHSAGFVYLQFDNTQSAMNAQRALHGRWFAGKMITASYMVPQNYEAKFP 1289
            KFG +KHIYVDK SAGFVYL+F++TQSA++AQ+ALHGRWFAGKMITAS+MVPQ+YE KFP
Sbjct: 535  KFGALKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFP 594

Query: 1290 D 1292
            D
Sbjct: 595  D 595



 Score = 84.0 bits (206), Expect(2) = e-146
 Identities = 41/47 (87%), Positives = 45/47 (95%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   RRYKEKKEEV-EPEADPERDQRTVFAYQISLKADEKDVFQFFSRAGK 138
           RR+KEKKEE  EPEADPERDQRTVFAYQISLKADE+DV++FFSRAGK
Sbjct: 202 RRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGK 248


>ref|XP_003555861.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
          Length = 600

 Score =  454 bits (1169), Expect(2) = e-142
 Identities = 244/361 (67%), Positives = 274/361 (75%), Gaps = 1/361 (0%)
 Frame = +3

Query: 213  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGLPVMVKPSEAEKNLVQST 392
            VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQ LLG PVMVKPSEAEKNLVQST
Sbjct: 252  VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQST 311

Query: 393  TAVVXXXXXXXXXXXX-ARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDESGHCKG 569
            T+V              AR+LYVGNLH +ITE  +R+VFE FG VELVQLPLDESGHCKG
Sbjct: 312  TSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKG 371

Query: 570  FGFVQFARLEDARNAQNLNGQLDIAGRTIKVSAVSDQVGMQEIGVNAXXXXXXXXXXMSL 749
            FGFVQFARLEDARNAQ+LNGQL+I GRTIKVSAV+DQ GMQE G N           MSL
Sbjct: 372  FGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEFGGNTGDFDDDEGGGMSL 431

Query: 750  NARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTIPIVXXXXXXXX 929
            NA SRA+LMQKLDRSG  SS+ GS+   V+N +GL         +P+T  I+        
Sbjct: 432  NACSRAMLMQKLDRSGTASSMVGSLGNSVVNNTGL--------NLPATGNIL------AA 477

Query: 930  XXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLDIKEDVQAECS 1109
                        +PT T  SID IG+ SECL+LK+MFDP  E EPDFDLDIKEDV+AECS
Sbjct: 478  APVGELAGGGLQIPTATIPSIDTIGVASECLMLKNMFDPKDEIEPDFDLDIKEDVEAECS 537

Query: 1110 KFGLVKHIYVDKHSAGFVYLQFDNTQSAMNAQRALHGRWFAGKMITASYMVPQNYEAKFP 1289
            K G +KHIYVDK SAGFVYL+F++TQSA++AQ+ALHGRWFAGKMITAS+MVPQ+YE KFP
Sbjct: 538  KLGTLKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFP 597

Query: 1290 D 1292
            D
Sbjct: 598  D 598



 Score = 80.1 bits (196), Expect(2) = e-142
 Identities = 38/46 (82%), Positives = 41/46 (89%)
 Frame = +1

Query: 1   RRYKEKKEEVEPEADPERDQRTVFAYQISLKADEKDVFQFFSRAGK 138
           RR+KEKKEE    ADPERDQR VFAYQISLKADE+DVF+FFSRAGK
Sbjct: 206 RRHKEKKEETTEPADPERDQRAVFAYQISLKADERDVFEFFSRAGK 251