BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011542
         (924 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             102   1e-19
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    93   8e-17
gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thali...    92   2e-16
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    92   2e-16
gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana] gi|...    91   5e-16

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  102 bits (255), Expect = 1e-19
 Identities = 51/135 (37%), Positives = 76/135 (56%)
 Frame = +3

Query: 396  VSFSDCDLYGVFQPHYDAVMISAFIGMWRVQKIMLDTGSSVSVLFSRAYVEMKLPQELII 575
            +SF+D DL G+  PH D +++   I   RV ++++DTGSSV ++F      M +    I 
Sbjct: 600  ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659

Query: 576  PEENPIVRFDGTATILIGAVRRLVTVGNKWVEINFLLMNCHSPYNAILGRDWIHQM*AVI 755
            P   P+  FDG   + IG ++  + VG     + F+++   + YN ILG  WIHQM A+ 
Sbjct: 660  PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 719

Query: 756  STFHQAVKFLCSQGI 800
            ST+HQ VKF    GI
Sbjct: 720  STYHQCVKFPTHNGI 734


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 93.2 bits (230), Expect = 8e-17
 Identities = 51/142 (35%), Positives = 80/142 (56%)
 Frame = +3

Query: 396 VSFSDCDLYGVFQPHYDAVMISAFIGMWRVQKIMLDTGSSVSVLFSRAYVEMKLPQELII 575
           ++F+  DL+GV  PH D ++I   IG   V +I++DTGSSV+V+F     +MK+    I 
Sbjct: 330 LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389

Query: 576 PEENPIVRFDGTATILIGAVRRLVTVGNKWVEINFLLMNCHSPYNAILGRDWIHQM*AVI 755
           P   P+  FDG   +  G ++  + +G       F++++  + YN ILG  WIH M A+ 
Sbjct: 390 PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449

Query: 756 STFHQAVKFLCSQGICKIWSDQ 821
           S++HQ +K   S GI  I  +Q
Sbjct: 450 SSYHQCIKIPTSIGIETIRGNQ 471


>gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thaliana]
          Length = 1295

 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 52/151 (34%), Positives = 85/151 (56%)
 Frame = +3

Query: 387 CRRVSFSDCDLYGVFQPHYDAVMISAFIGMWRVQKIMLDTGSSVSVLFSRAYVEMKLPQE 566
           C  +SFS+ +   + +PH DA++IS  +G   VQ++++DTGSSV ++F    V M + ++
Sbjct: 445 CPEISFSEEETSDLDKPHDDALVISLDVGNCEVQRVLIDTGSSVDLIFLDTLVRMGISKK 504

Query: 567 LIIPEENPIVRFDGTATILIGAVRRLVTVGNKWVEINFLLMNCHSPYNAILGRDWIHQM* 746
            I    +P+V F    ++L+  +   VT       I F + +  + YN ILG  W+++M 
Sbjct: 505 DIKGALSPLVSFTSETSMLLRTITLPVTAQGIVKMIEFTVFDRPAAYNIILGTPWLYEMK 564

Query: 747 AVISTFHQAVKFLCSQGICKIWSDQKDIYIV 839
           AV ST+HQ VKF    G+ +I   Q+   IV
Sbjct: 565 AVPSTYHQCVKFPTPTGVKQILGSQRTSRIV 595


>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 92.0 bits (227), Expect = 2e-16
 Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
 Frame = +3

Query: 396 VSFSDCDLYGVFQPHYDAVMISAFIGMWRVQKIMLDTGSSVSVLFSRAYVEMKLPQELII 575
           ++F + ++  + +PH DA++I   +G + +  IM+DTGSSV VLF  A+         + 
Sbjct: 47  ITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQ 106

Query: 576 PEENPIVRFDGTATILIGAVRRLVTVGNKWVEI-NFLLMNCHSPYNAILGRDWIHQM*AV 752
             + P+  F G  T  IG ++ L T+     ++ NFL+++  +P+NAILGR W+H M AV
Sbjct: 107 GRKTPLTGFAGDTTFSIGTIQ-LPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAV 165

Query: 753 ISTFHQAVKFLCSQGICKIWSDQK 824
            ST+HQ +KF   +GI  ++  Q+
Sbjct: 166 PSTYHQCIKFPSYKGIAVVYGSQR 189


>gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana]
           gi|7267161|emb|CAB77873.1| putative transposon protein
           [Arabidopsis thaliana]
          Length = 681

 Score = 90.5 bits (223), Expect = 5e-16
 Identities = 48/139 (34%), Positives = 78/139 (56%)
 Frame = +3

Query: 393 RVSFSDCDLYGVFQPHYDAVMISAFIGMWRVQKIMLDTGSSVSVLFSRAYVEMKLPQELI 572
           +++F + +   + +PH DA++I   +G + +  IM+DTGSSV VLF  A+  M      +
Sbjct: 520 QITFWESETTDLNKPHDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSEL 579

Query: 573 IPEENPIVRFDGTATILIGAVRRLVTVGNKWVEINFLLMNCHSPYNAILGRDWIHQM*AV 752
              + P+  F G  T  +G ++            +FL++N  +P+NAILGR W+H M AV
Sbjct: 580 QGRKTPLTGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVNKKAPFNAILGRPWLHAMKAV 639

Query: 753 ISTFHQAVKFLCSQGICKI 809
            ST+HQ +KF   +GI  +
Sbjct: 640 PSTYHQCIKFPSDKGIAVV 658