BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011488
         (1216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271292.1| PREDICTED: RING-H2 finger protein ATL2-like ...   212   2e-52
ref|XP_002271253.1| PREDICTED: RING-H2 finger protein ATL2-like ...   212   2e-52
ref|XP_002315508.1| predicted protein [Populus trichocarpa] gi|2...   194   4e-47
ref|XP_002328624.1| predicted protein [Populus trichocarpa] gi|2...   184   4e-44
gb|AAW33880.1| RING-H2 subgroup RHE protein [Populus tremula x P...   184   5e-44

>ref|XP_002271292.1| PREDICTED: RING-H2 finger protein ATL2-like isoform 2 [Vitis
            vinifera]
          Length = 320

 Score =  212 bits (539), Expect = 2e-52
 Identities = 136/297 (45%), Positives = 159/297 (53%), Gaps = 20/297 (6%)
 Frame = -3

Query: 1124 YALSGKIMLSAXXXXXXXXXXXXXLHIYARWYLAXXXXXXXXXXXXXRAHIIFXXXXXXX 945
            YALSGKIMLSA             LHIYARWYL                H++F       
Sbjct: 23   YALSGKIMLSAIVILFAVVVLMVCLHIYARWYLYRTRRRHHARARRRH-HLVFYVDPTNP 81

Query: 944  TIS-----QGLDASLLKYLPTFIYTSNSHEHDALECAVCLSEFEENEKGRLLPKCNHSFH 780
              S     +GLDAS+L  LP F+Y+S +H  D  ECAVCLSEFEENEKGR LPKCNHSFH
Sbjct: 82   AASVSSPTRGLDASILNSLPVFVYSSKTHT-DMSECAVCLSEFEENEKGRRLPKCNHSFH 140

Query: 779  IGCIDMWFHSHSTCPLCRSPVTIPEPENTRQTPLEIVVHSPNTQQPETPSSILXXXXXXX 600
            IGCIDMWFHSHSTCPLCRS V     E+  + P ++V+    T+   T +          
Sbjct: 141  IGCIDMWFHSHSTCPLCRSAVNAETSESASRNPTDVVISMAETEGGSTSALCSTCQHDED 200

Query: 599  XXXXXXXXXXXXXXAF-------ELAGVVSIEVPRRNESFKNLEEGSPLGS---QVFKSP 450
                          +        ELAG VSIEVPRRNE+F   E+ S L S   +V KSP
Sbjct: 201  RTGRLRTSSSVGSSSVGSRRKSSELAG-VSIEVPRRNENFGLSEDESLLDSPATRVQKSP 259

Query: 449  GGRIRSFKRILSRDRKQPSTPMS----CCSSAAAIEIDLERG-ENEEQAQQASSPTP 294
            G RI S KRILSRDRK   +P S     C S    E D+ERG E+ +Q Q  + P P
Sbjct: 260  GSRILSLKRILSRDRKSMLSPTSVPGVSCGSVTEFEADIERGTEDTQQIQTQTQPQP 316


>ref|XP_002271253.1| PREDICTED: RING-H2 finger protein ATL2-like isoform 1 [Vitis
            vinifera]
          Length = 317

 Score =  212 bits (539), Expect = 2e-52
 Identities = 136/297 (45%), Positives = 159/297 (53%), Gaps = 20/297 (6%)
 Frame = -3

Query: 1124 YALSGKIMLSAXXXXXXXXXXXXXLHIYARWYLAXXXXXXXXXXXXXRAHIIFXXXXXXX 945
            YALSGKIMLSA             LHIYARWYL                H++F       
Sbjct: 20   YALSGKIMLSAIVILFAVVVLMVCLHIYARWYLYRTRRRHHARARRRH-HLVFYVDPTNP 78

Query: 944  TIS-----QGLDASLLKYLPTFIYTSNSHEHDALECAVCLSEFEENEKGRLLPKCNHSFH 780
              S     +GLDAS+L  LP F+Y+S +H  D  ECAVCLSEFEENEKGR LPKCNHSFH
Sbjct: 79   AASVSSPTRGLDASILNSLPVFVYSSKTHT-DMSECAVCLSEFEENEKGRRLPKCNHSFH 137

Query: 779  IGCIDMWFHSHSTCPLCRSPVTIPEPENTRQTPLEIVVHSPNTQQPETPSSILXXXXXXX 600
            IGCIDMWFHSHSTCPLCRS V     E+  + P ++V+    T+   T +          
Sbjct: 138  IGCIDMWFHSHSTCPLCRSAVNAETSESASRNPTDVVISMAETEGGSTSALCSTCQHDED 197

Query: 599  XXXXXXXXXXXXXXAF-------ELAGVVSIEVPRRNESFKNLEEGSPLGS---QVFKSP 450
                          +        ELAG VSIEVPRRNE+F   E+ S L S   +V KSP
Sbjct: 198  RTGRLRTSSSVGSSSVGSRRKSSELAG-VSIEVPRRNENFGLSEDESLLDSPATRVQKSP 256

Query: 449  GGRIRSFKRILSRDRKQPSTPMS----CCSSAAAIEIDLERG-ENEEQAQQASSPTP 294
            G RI S KRILSRDRK   +P S     C S    E D+ERG E+ +Q Q  + P P
Sbjct: 257  GSRILSLKRILSRDRKSMLSPTSVPGVSCGSVTEFEADIERGTEDTQQIQTQTQPQP 313


>ref|XP_002315508.1| predicted protein [Populus trichocarpa] gi|222864548|gb|EEF01679.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  194 bits (493), Expect = 4e-47
 Identities = 117/278 (42%), Positives = 154/278 (55%), Gaps = 12/278 (4%)
 Frame = -3

Query: 1124 YALSGKIMLSAXXXXXXXXXXXXXLHIYARWYLAXXXXXXXXXXXXXRAHIIFXXXXXXX 945
            +ALSGKIMLSA             LH YARWYL              R H++F       
Sbjct: 1    FALSGKIMLSAVVILFLVIILMVCLHFYARWYLIRARRRHIRHARNRRNHLVFYVDSAHN 60

Query: 944  T------ISQGLDASLLKYLPTFIYTSNSHEHDALECAVCLSEFEENEKGRLLPKCNHSF 783
                   +++GL+ ++LK LP F+Y+  +H+ D++ECAVCLSEF+ENE GR LPKCNHSF
Sbjct: 61   PTIVTTQVTRGLEETVLKSLPVFVYSEKTHQ-DSMECAVCLSEFQENETGRTLPKCNHSF 119

Query: 782  HIGCIDMWFHSHSTCPLCRSPVTIPEPENTRQTPLEIVVHSPNTQQPETPSSILXXXXXX 603
            HIGCIDMWFHSHSTCPLCRSPV  P  EN  Q      +  P +    + S  +      
Sbjct: 120  HIGCIDMWFHSHSTCPLCRSPVE-PVTENPVQDGPGYGISVPGS---GSSSGTMCQHEED 175

Query: 602  XXXXXXXXXXXXXXXAFELAGVVSIEVPRRNESFKN-LEEGSPLGSQVFKSPGGRIRSFK 426
                             EL G V+IEVPRRN +F++     SP  S  F+SP  R+ SFK
Sbjct: 176  RVGSASTSSFNDRRKQMELIG-VTIEVPRRNGNFEDESNTESPSASHAFRSPMSRMLSFK 234

Query: 425  RILSRDRKQPSTP-----MSCCSSAAAIEIDLERGENE 327
            R+LSR+R+  ++P     +SC   +   E+D+ERG++E
Sbjct: 235  RMLSRERRGTASPNVATSVSCGGESGTTEMDVERGQDE 272


>ref|XP_002328624.1| predicted protein [Populus trichocarpa] gi|222838606|gb|EEE76971.1|
            predicted protein [Populus trichocarpa]
          Length = 293

 Score =  184 bits (467), Expect = 4e-44
 Identities = 114/287 (39%), Positives = 150/287 (52%), Gaps = 13/287 (4%)
 Frame = -3

Query: 1133 QEKYALSGKIMLSAXXXXXXXXXXXXXLHIYARWYLAXXXXXXXXXXXXXRAHIIFXXXX 954
            +E YALSGKIMLSA             LH+YARWYL              R H++F    
Sbjct: 13   REGYALSGKIMLSAIVILFFVVILMVFLHLYARWYLTRARQRQVRRVRNRRTHLVFYVDS 72

Query: 953  XXXT------ISQGLDASLLKYLPTFIYTSNSHEHDALECAVCLSEFEENEKGRLLPKCN 792
                      +++GL+ ++   LP F+Y+  +H+ D++ECAVCLSEFEENE+GR+LPKCN
Sbjct: 73   AQDPNNVTSHVTRGLEETVKNSLPVFVYSRKTHQ-DSIECAVCLSEFEENERGRVLPKCN 131

Query: 791  HSFHIGCIDMWFHSHSTCPLCRSPVTIPEPENTRQTPLEIVVHSPNTQQPETPSSILXXX 612
            HSFH  CIDMWFHSHSTCPLCRSPV  P  EN        V    N    E  S +    
Sbjct: 132  HSFHTECIDMWFHSHSTCPLCRSPVE-PVAENP-------VPEGSNFGISEAGSGLCTSC 183

Query: 611  XXXXXXXXXXXXXXXXXXAFELAGV-VSIEVPRRNESFKN-LEEGSPLGSQVFKSPGGRI 438
                                 +  + V+I+VPRRN +F++     SP  S  F+SP  R+
Sbjct: 184  QHEEDHVGSASTSSFNDGRKPVGLIGVTIDVPRRNGNFEDESNTESPSASHSFRSPMSRM 243

Query: 437  RSFKRILSRDRKQPSTP-----MSCCSSAAAIEIDLERGENEEQAQQ 312
             SFKR+LSR+R+   +P     +SC   +   E D+E G +E   QQ
Sbjct: 244  LSFKRMLSRERRGTVSPTVANSVSCGGGSGTTEFDIEHGRDESMPQQ 290


>gb|AAW33880.1| RING-H2 subgroup RHE protein [Populus tremula x Populus alba]
          Length = 293

 Score =  184 bits (466), Expect = 5e-44
 Identities = 114/287 (39%), Positives = 150/287 (52%), Gaps = 13/287 (4%)
 Frame = -3

Query: 1133 QEKYALSGKIMLSAXXXXXXXXXXXXXLHIYARWYLAXXXXXXXXXXXXXRAHIIFXXXX 954
            +E YALSGKIMLSA             LH+YARWYL              R H++F    
Sbjct: 13   REGYALSGKIMLSAILILFFVIIVMVLLHLYARWYLTRARQRQVRRVRNRRTHLVFYVDS 72

Query: 953  XXXT------ISQGLDASLLKYLPTFIYTSNSHEHDALECAVCLSEFEENEKGRLLPKCN 792
                      +++GL+ ++   LP F+Y   +H+ D++ECAVCLSEFEENE+GR+LPKCN
Sbjct: 73   PQNPNNVTSHVTRGLEETVKNSLPVFVYPRKTHQ-DSIECAVCLSEFEENERGRVLPKCN 131

Query: 791  HSFHIGCIDMWFHSHSTCPLCRSPVTIPEPENTRQTPLEIVVHSPNTQQPETPSSILXXX 612
            HSFH  CIDMWFHSHSTCPLCRSPV  P  EN        V    N    E  S +    
Sbjct: 132  HSFHTECIDMWFHSHSTCPLCRSPVE-PVAENP-------VPEGSNFGISEAGSGLCTSC 183

Query: 611  XXXXXXXXXXXXXXXXXXAFELAGV-VSIEVPRRNESFKN-LEEGSPLGSQVFKSPGGRI 438
                                 +  + V+I+VPRRN +F++     SP  S  F+SP  R+
Sbjct: 184  QHEEDHLGSASTSSFNGGRKPVGLIGVTIDVPRRNGNFEDESNTESPSASHSFRSPMSRM 243

Query: 437  RSFKRILSRDRKQPSTP-----MSCCSSAAAIEIDLERGENEEQAQQ 312
             SFKR+LSR+R+   +P     +SC   +   E D+E+G +E   QQ
Sbjct: 244  LSFKRMLSRERRGTVSPTVANSVSCGGGSGTTEFDIEQGRDESMPQQ 290