BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011475
         (1814 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...   650   0.0  
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]   636   e-180
emb|CBI37137.3| unnamed protein product [Vitis vinifera]              608   e-171
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...   568   e-159
ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cu...   558   e-156

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score =  650 bits (1677), Expect = 0.0
 Identities = 353/565 (62%), Positives = 408/565 (72%), Gaps = 12/565 (2%)
 Frame = +3

Query: 156  EEEDRILFSGLGVTSANPEDIERDILGEATDKV---GEAGGSIEEQLLDNEKVGDXXXXX 326
            EEEDRIL S LGVTSANPED+ER+IL  AT++     EAG S EE+ LD  K  +     
Sbjct: 3    EEEDRILLSSLGVTSANPEDVEREILAAATNEAENGSEAGRSTEEEFLDKSKATELSSTS 62

Query: 327  RVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATNS 506
            + KL SKLRA+EVEIDAVA + +QA +   NE + S   DN  Q   EDDK  I+ + N+
Sbjct: 63   QAKLYSKLRALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPNN 122

Query: 507  LNLQHALAKDRLRSLKKTKVQL-------QNXXXXXXXXXXXXXXXXVKEEVKPKRKLKE 665
            L LQHALA DRLRSLKKTK QL       Q                 VKEE +PK++LKE
Sbjct: 123  LTLQHALAADRLRSLKKTKAQLEIELSDWQKEKPSKTVEHDKVIQNLVKEEARPKKRLKE 182

Query: 666  AQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERR 845
               S KD KKR+KT+S+D+DVDFDAVLDAASAGFVETERD+LVRKGILTPFHKLKGFERR
Sbjct: 183  IPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETERDKLVRKGILTPFHKLKGFERR 242

Query: 846  LQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTH 1022
            LQQPGPS R  +PEE DK DD+ASA++ARAV+S+S++AQARPTTKLLD++ LPKLDAP+H
Sbjct: 243  LQQPGPSSRDNLPEEGDKIDDLASASIARAVQSISESAQARPTTKLLDSETLPKLDAPSH 302

Query: 1023 PFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPDKKWRKAASREVELSEGSDEARDNLT 1202
            PF R                           PLP KKWRK  S E EL E S++  DNL 
Sbjct: 303  PFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPSKKWRKIISHEEELLEESEDTSDNLV 362

Query: 1203 TSDNEEENL-GVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGG 1379
            TS NEE N   +EDADD+EP  VTL+GGL+IPE IFSKLFDYQKVGVQWLWELHCQ+ GG
Sbjct: 363  TSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWELHCQQVGG 422

Query: 1380 IIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHD 1559
            IIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY  F VEILHD
Sbjct: 423  IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQSFHVEILHD 482

Query: 1560 SAQVPSNRKGRTQSDESDCDTECSLASDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLI 1739
            SAQ P++RK R +S ES    E SL SD+E +LS         WD LI RVLRS+SGLLI
Sbjct: 483  SAQDPASRKKRAKSYES----EDSLDSDDEENLS---SKDTKKWDSLINRVLRSQSGLLI 535

Query: 1740 TTYEQLRLLGGKLLDIEWGYAVLDE 1814
            TTYEQ+RL  GKLLDI+WGYA+LDE
Sbjct: 536  TTYEQIRLQAGKLLDIKWGYAILDE 560


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  636 bits (1641), Expect = e-180
 Identities = 352/587 (59%), Positives = 408/587 (69%), Gaps = 34/587 (5%)
 Frame = +3

Query: 156  EEEDRILFSGLGVTSANPEDIERDILG----------------------EATDKV---GE 260
            EEEDRIL S LGVTSANPED+ER+IL                       EAT++     E
Sbjct: 3    EEEDRILLSSLGVTSANPEDVEREILAAYIDHIVPLGCRSVRVSFSNEPEATNEAENGSE 62

Query: 261  AGGSIEEQLLDNEKVGDXXXXXRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGS 440
            AG S EE+ LD  K  +     + KL SKL A+EVEIDAVA + +QA +   NE + S  
Sbjct: 63   AGRSTEEEFLDKSKATELSSTSQAKLYSKLXALEVEIDAVAYTVQQARNTERNENHVSHG 122

Query: 441  IDNGEQEGKEDDKNDIRNATNSLNLQHALAKDRLRSLKKTKVQL-------QNXXXXXXX 599
             DN  Q   EDDK  I+ + N+L LQHALA DRLRSLKKTK QL       Q        
Sbjct: 123  NDNRAQGDAEDDKLVIQASPNNLTLQHALAADRLRSLKKTKAQLEIELSDWQKEKPSKTV 182

Query: 600  XXXXXXXXXVKEEVKPKRKLKEAQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETE 779
                     VKEE +PK++LKE   S KD KKR+KT+S+D+DVDFDAVLDAASAGFVETE
Sbjct: 183  EHDKVIQNLVKEEARPKKRLKEIPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETE 242

Query: 780  RDELVRKGILTPFHKLKGFERRLQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAA 956
            RD+LVRKGILTPFHKLKGFERRLQQPGPS R  +PEE DK DD+ASA++ARAV+S+S++A
Sbjct: 243  RDKLVRKGILTPFHKLKGFERRLQQPGPSSRGNLPEEGDKIDDLASASIARAVQSISESA 302

Query: 957  QARPTTKLLDAQDLPKLDAPTHPFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPDKKW 1136
            QARPTTK+LD++ LPKLDAP+HPF R                           PLP KKW
Sbjct: 303  QARPTTKMLDSETLPKLDAPSHPFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPGKKW 362

Query: 1137 RKAASREVELSEGSDEARDNLTTSDNEEENL-GVEDADDSEPSHVTLDGGLKIPEVIFSK 1313
            RK  S E EL E S++  DNL TS NEE N   +EDADD+EP  VTL+GGL+IPE IFSK
Sbjct: 363  RKIISHEEELLEESEDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSK 422

Query: 1314 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTL 1493
            LFDYQKVGVQWLWELHCQ+ GGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTL
Sbjct: 423  LFDYQKVGVQWLWELHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTL 482

Query: 1494 LRQWRREARKWYPRFRVEILHDSAQVPSNRKGRTQSDESDCDTECSLASDEEISLSXXXX 1673
            LRQW+REA+KWY  F VEILHDSAQ P++RK R +S ES    E SL SD+E +LS    
Sbjct: 483  LRQWKREAKKWYQSFHVEILHDSAQDPASRKKRAKSYES----EDSLDSDDEENLS---S 535

Query: 1674 XXXXXWDLLIGRVLRSESGLLITTYEQLRLLGGKLLDIEWGYAVLDE 1814
                 WD LI RVLRS+SGLLITTYEQ+RL  GKLLDI+WGYA+LDE
Sbjct: 536  KDTKKWDSLINRVLRSQSGLLITTYEQIRLQAGKLLDIKWGYAILDE 582


>emb|CBI37137.3| unnamed protein product [Vitis vinifera]
          Length = 1116

 Score =  608 bits (1569), Expect = e-171
 Identities = 335/565 (59%), Positives = 388/565 (68%), Gaps = 12/565 (2%)
 Frame = +3

Query: 156  EEEDRILFSGLGVTSANPEDIERDILGEATDKV---GEAGGSIEEQLLDNEKVGDXXXXX 326
            EEEDRIL S LGVTSANPED+ER+IL  AT++     EAG S EE+ LD  K  +     
Sbjct: 3    EEEDRILLSSLGVTSANPEDVEREILAAATNEAENGSEAGRSTEEEFLDKSKATELSSTS 62

Query: 327  RVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATNS 506
            + KL SKLRA+EVEIDAVA + +QA +   NE + S   DN  Q   EDDK  I+ + N+
Sbjct: 63   QAKLYSKLRALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPNN 122

Query: 507  LNLQHALAKDRLRSLKKTKVQL-------QNXXXXXXXXXXXXXXXXVKEEVKPKRKLKE 665
            L LQHALA DRLRSLKKTK QL       Q                 VKEE +PK++LKE
Sbjct: 123  LTLQHALAADRLRSLKKTKAQLEIELSDWQKEKPSKTVEHDKVIQNLVKEEARPKKRLKE 182

Query: 666  AQASKKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERR 845
               S KD KKR+KT+S+D+DVDFDAVLDAASAGFVETERD+LVRKGILTPFHKLKGFERR
Sbjct: 183  IPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETERDKLVRKGILTPFHKLKGFERR 242

Query: 846  LQQPGPSRR-TVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTH 1022
            LQQPGPS R  +PEE DK DD+ASA++ARAV+S+S++AQARPTTKLLD++ LPKLDAP+H
Sbjct: 243  LQQPGPSSRDNLPEEGDKIDDLASASIARAVQSISESAQARPTTKLLDSETLPKLDAPSH 302

Query: 1023 PFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPDKKWRKAASREVELSEGSDEARDNLT 1202
            PF R                           PLP KKWRK  S E EL E S++  DNL 
Sbjct: 303  PFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPSKKWRKIISHEEELLEESEDTSDNLV 362

Query: 1203 TSDNEEENL-GVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGG 1379
            TS NEE N   +EDADD+EP  VTL+GGL+IPE IFSKLFDYQKVGVQWLWELHCQ+ GG
Sbjct: 363  TSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWELHCQQVGG 422

Query: 1380 IIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHD 1559
            IIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW+REA+KWY          
Sbjct: 423  IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWY---------- 472

Query: 1560 SAQVPSNRKGRTQSDESDCDTECSLASDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLI 1739
                                 + SL SD+E +LS         WD LI RVLRS+SGLLI
Sbjct: 473  ---------------------QNSLDSDDEENLS---SKDTKKWDSLINRVLRSQSGLLI 508

Query: 1740 TTYEQLRLLGGKLLDIEWGYAVLDE 1814
            TTYEQ+RL  GKLLDI+WGYA+LDE
Sbjct: 509  TTYEQIRLQAGKLLDIKWGYAILDE 533


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score =  568 bits (1464), Expect = e-159
 Identities = 321/564 (56%), Positives = 383/564 (67%), Gaps = 12/564 (2%)
 Frame = +3

Query: 159  EEDRILFSGLGVTSANPEDIERDILGEATDKVGEAGGSIEEQLLDNEKVGDXXXXXRVKL 338
            +ED +L S LGVTSANPEDIER +L EA +   + GGS EE+  D  +  D     + KL
Sbjct: 4    DEDSVLLSSLGVTSANPEDIERVVLEEARNNA-DKGGSTEEEPPDKLENVDPSSANQAKL 62

Query: 339  QSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATNSLNLQ 518
             SKLRAV+ EIDAVA++ E+ +  V  E          ++  K DD++ ++ + +   LQ
Sbjct: 63   YSKLRAVKFEIDAVASTVEEVTDVVSGEHQTYDDGGGTKKRDKGDDESGVQVSPDDFTLQ 122

Query: 519  HALAKDRLRSLKKTKVQLQNXXXXXXXXXXXXXXXX-------VKEEVKPKRKLKEAQAS 677
             ALA DRLRSLK+TKV+L+                        VKE+ +PK+K K+   S
Sbjct: 123  QALAADRLRSLKRTKVKLEKELLDLRKDDATKAVEHDKLLANLVKEDPRPKKKSKKVLKS 182

Query: 678  KKDTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRLQQP 857
             K+ +K+QKTVS+ +D DFD +LD AS+GFVETERDELVRKGILTPFH+LKGFERRLQQP
Sbjct: 183  GKNKEKQQKTVSFADDADFDLMLDGASSGFVETERDELVRKGILTPFHQLKGFERRLQQP 242

Query: 858  GPSR-RTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPTHPFRR 1034
            G S  +    EEDKTD + S +V RA  SM +AA+ARPTTKLLD++ LPKLDAPT PF+R
Sbjct: 243  GSSSGKNESIEEDKTDGLDSDSVVRAAHSMLEAAKARPTTKLLDSEALPKLDAPTRPFQR 302

Query: 1035 XXXXXXXXXXXXXXXXXXXXXXXXXXXPLPDKKWRKAASREVELSEGSDEARDNLTTSDN 1214
                                       PLP KKWRK+AS E ++ E  D  R NL TS +
Sbjct: 303  LKTPLKACQSPERDAEKRKGSERKRKRPLPGKKWRKSASWE-DMGESEDSGR-NLVTSIS 360

Query: 1215 EEENLGVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGGIIGDE 1394
            EE+   V+D  D++   +TL+GGLKIPE IFSKLFDYQKVGVQWLWELHCQRAGGIIGDE
Sbjct: 361  EED---VDDGYDNDSPFITLEGGLKIPEAIFSKLFDYQKVGVQWLWELHCQRAGGIIGDE 417

Query: 1395 MGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHDSAQVP 1574
            MGLGKTIQV+SFLGALHFS MYKPSI+VCPVTLLRQW+REA+KWYPRF VE+LHDSAQ  
Sbjct: 418  MGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPRFHVELLHDSAQDV 477

Query: 1575 SNR----KGRTQSDESDCDTECSLASDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLIT 1742
            S R    K R QS ESDC+TE SL SD E S+S         WD LI RV  S+SGLLIT
Sbjct: 478  SCRDPLKKKRAQSYESDCETEDSLDSDYEGSIS---CRKANKWDSLINRVFESDSGLLIT 534

Query: 1743 TYEQLRLLGGKLLDIEWGYAVLDE 1814
            TYEQLRLLG KLLD EWGYAVLDE
Sbjct: 535  TYEQLRLLGEKLLDFEWGYAVLDE 558


>ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus]
            gi|449522123|ref|XP_004168077.1| PREDICTED: DNA repair
            protein rhp26-like [Cucumis sativus]
          Length = 1221

 Score =  558 bits (1439), Expect = e-156
 Identities = 321/565 (56%), Positives = 367/565 (64%), Gaps = 11/565 (1%)
 Frame = +3

Query: 153  EEEEDRILFSGLGVTSANPEDIERDILGEATDKVG---EAGGSIEEQLLDNEKVGDXXXX 323
            EE EDRI  + LGVTSANPEDIERD+L EA  K     E GG  EE + D     D    
Sbjct: 2    EEVEDRIFLNSLGVTSANPEDIERDLLNEAKKKSENGVEVGGIEEENVCDKLDTTDSPSA 61

Query: 324  XRVKLQSKLRAVEVEIDAVAASFEQASSRVENEEYFSGSIDNGEQEGKEDDKNDIRNATN 503
              V+L  KLRAVE EIDAVA++ E       NE++   S D+ +   +ED  +      +
Sbjct: 62   SHVQLYQKLRAVEYEIDAVASTVEPGEKLERNEQHSCVSTDSQKHAREEDSVS-----AS 116

Query: 504  SLNLQHALAKDRLRSLKKTKVQLQNXXXXXXXXXXXXXXXXVKEEVKPKRKLKEAQASKK 683
               LQHALA DRLRSLKKT+ QL+N                VK+  KPKRK KE + S  
Sbjct: 117  GDGLQHALAVDRLRSLKKTQHQLKNELFHLNDKHAKTILEIVKDRSKPKRKSKEVKKSGN 176

Query: 684  DTKKRQKTVSYDEDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRLQQPGP 863
            D  KR K VS+DED DFDA LDAA+ GFVETERDELVRKGILTPFHKLKGFERRLQ PG 
Sbjct: 177  DGGKRLKVVSFDEDNDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQSPGQ 236

Query: 864  S--------RRTVPEEEDKTDDIASATVARAVRSMSDAAQARPTTKLLDAQDLPKLDAPT 1019
            S        R  V EEE++ DD AS +VARA+RSMS AAQARPTTKLLD   LPKLD PT
Sbjct: 237  SSLQNPRGSRDEVKEEEEENDDFASDSVARALRSMSVAAQARPTTKLLDPDALPKLDPPT 296

Query: 1020 HPFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPDKKWRKAASREVELSEGSDEARDNL 1199
             PF R                           PLPDKK+R+  + E    E ++   D L
Sbjct: 297  RPFYRLKTPAKVPLSAEDKPTTKTKSKQTRR-PLPDKKYRRQIAMEERDKEATENMSDGL 355

Query: 1200 TTSDNEEENLGVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQWLWELHCQRAGG 1379
             TS +E E+ G  + D +E S VTL+GGLKIP+ IF +LFDYQKVGVQWLWELHCQRAGG
Sbjct: 356  ATSSSEREDSGDLEDDVNELSFVTLEGGLKIPQSIFDELFDYQKVGVQWLWELHCQRAGG 415

Query: 1380 IIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARKWYPRFRVEILHD 1559
            IIGDEMGLGKT+QV+SFLGALHFS +YKPSIIVCPVTL+RQW+REARKW PR   EILHD
Sbjct: 416  IIGDEMGLGKTVQVLSFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPRLLAEILHD 475

Query: 1560 SAQVPSNRKGRTQSDESDCDTECSLASDEEISLSXXXXXXXXXWDLLIGRVLRSESGLLI 1739
            SA  P+ +  R +SD SD ++E S  SD               WD LI RVLRSESGLLI
Sbjct: 476  SAHDPTYKNMREKSDGSD-ESEDSEGSDYR---KNSQPKGTKRWDALINRVLRSESGLLI 531

Query: 1740 TTYEQLRLLGGKLLDIEWGYAVLDE 1814
            TTYEQLRLLG KLLDIEWGYA+LDE
Sbjct: 532  TTYEQLRLLGDKLLDIEWGYAILDE 556