BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011369
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   127   1e-27
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   122   3e-26
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   120   9e-26
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   120   1e-25

>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  127 bits (318), Expect = 1e-27
 Identities = 62/139 (44%), Positives = 95/139 (68%), Gaps = 2/139 (1%)
 Frame = +3

Query: 3   MIPEAEALLERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKN--EYEWKP 176
           MI EA  L E   ++  +   +TL++FM FYL+K QLD A+KYL   AS  +    +W P
Sbjct: 354 MIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFP 413

Query: 177 SQDVVDMFLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRM 356
           +++ + MFL Y EE K+VD AE   ++++K++ + +++YDSLLRTY+AAG ++P M +RM
Sbjct: 414 TEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERM 473

Query: 357 KEDGIEASPSSKTLIVKVC 413
           K+DGIE S  ++ L+ KVC
Sbjct: 474 KDDGIEISSETEKLLQKVC 492


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/139 (43%), Positives = 95/139 (68%), Gaps = 2/139 (1%)
 Frame = +3

Query: 3   MIPEAEALLERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKN--EYEWKP 176
           +I EA  L E   ++  +   +TL++FM FYL+K QLD A+KYL   AS  +    +W P
Sbjct: 358 IIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFP 417

Query: 177 SQDVVDMFLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRM 356
           +++ + MFL Y EE K+VD AE   ++++K++ + +++YDSLLRTY+AAG ++P M +RM
Sbjct: 418 TEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERM 477

Query: 357 KEDGIEASPSSKTLIVKVC 413
           K+DGIE S  ++ L+ KVC
Sbjct: 478 KDDGIEISSETEKLLQKVC 496


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
           predicted protein [Populus trichocarpa]
          Length = 473

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/137 (44%), Positives = 86/137 (62%)
 Frame = +3

Query: 3   MIPEAEALLERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQ 182
           M  EA  + + A+++     F   EMFM F+L+  QLD ALK++K A S   E EW+P  
Sbjct: 336 MYEEAALIFDDALKRTEGLFFNAREMFMVFFLKNHQLDLALKHMKAAFSEVKEIEWQPEP 395

Query: 183 DVVDMFLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKE 362
             V  F  Y E+EK+V+GAE L K LK +N + +  YD LL+TY+AAG   PEM +R++E
Sbjct: 396 KTVSAFFAYFEDEKDVNGAERLCKILKHINRLDSNAYDLLLKTYIAAGKLAPEMRQRLEE 455

Query: 363 DGIEASPSSKTLIVKVC 413
           DGIE +P  + L+ +VC
Sbjct: 456 DGIEINPELENLLERVC 472


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  120 bits (302), Expect = 9e-26
 Identities = 60/137 (43%), Positives = 88/137 (64%)
 Frame = +3

Query: 3   MIPEAEALLERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQ 182
           M  EAE + + A+++   P F+  E FM F+L+  QLD ALK+++ A S   ++EWKP Q
Sbjct: 366 MYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHMRAAFSESEKHEWKPLQ 425

Query: 183 DVVDMFLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKE 362
           + V+ +  Y   EK+VDGAE L K LK +N +++ VY  LL+TY+AAG   PEM +R++E
Sbjct: 426 ETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYIAAGKLAPEMRQRLEE 485

Query: 363 DGIEASPSSKTLIVKVC 413
           D IE S   + L+  VC
Sbjct: 486 DNIEISDELEYLLESVC 502


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  120 bits (301), Expect = 1e-25
 Identities = 63/136 (46%), Positives = 91/136 (66%)
 Frame = +3

Query: 3   MIPEAEALLERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQ 182
           MI +AE++L  AV++   P +  L+MFM  +L+ R++D+ALKY++ AAS     EW+P+ 
Sbjct: 370 MIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAP 429

Query: 183 DVVDMFLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKE 362
           + V  FL+Y EEEK+V+GAE   K LK ++ + +  Y  LL+T VAAG  +PEM KRMKE
Sbjct: 430 ERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRMKE 489

Query: 363 DGIEASPSSKTLIVKV 410
           D IE    SK L+ +V
Sbjct: 490 DDIEV--DSKDLLQRV 503