BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011368
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    51   4e-13
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    75   2e-11
emb|CAN72278.1| hypothetical protein VITISV_043409 [Vitis vinifera]    49   8e-11
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    72   1e-10
emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]    70   7e-10

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 51.2 bits (121), Expect(3) = 4e-13
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +3

Query: 585 YTLDLDLINLMP*TITQAENGALIQTPTPDEIKRAVFYLNPDSAPGPDGFNGCFFQYCWS 764
           YT++ +L NL P  ++   N  L+   T +E++RA F +NP   PGPDG NG  +Q  W 
Sbjct: 404 YTVE-ELENLTP-LVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWE 461

Query: 765 IVG 773
            +G
Sbjct: 462 TMG 464



 Score = 43.1 bits (100), Expect(3) = 4e-13
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
 Frame = +1

Query: 76  APFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXXHWNKHTFGHLGTK 255
           A F++ K W    GF +L+   W +  T  +  ++ +           W +         
Sbjct: 238 AGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMM-EKIASCRREISKWKR--------- 287

Query: 256 IATKTKLLEDLQVNFELDSSNEALA---GMVLQ*ESKVENLLQQEEMLWKQKSRAKMDLE 426
           ++  +  +   ++ F+LD++ + +      + + + ++      EE  W++KSR      
Sbjct: 288 VSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRN 347

Query: 427 YDRNAKYYHALVNNTVNHY*VQELGCGYS*STGRDW 534
            DRN KY+HA   N      +Q+L        GR+W
Sbjct: 348 GDRNTKYFHAATKNRRAQNRIQKL----IDEEGREW 379



 Score = 26.2 bits (56), Expect(3) = 4e-13
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 2   TALGRICSDHSPLV 43
           T L +ICSDHSPL+
Sbjct: 213 TYLQKICSDHSPLI 226


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 36/126 (28%), Positives = 62/126 (49%)
 Frame = +1

Query: 82  FRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXXHWNKHTFGHLGTKIA 261
           F+F KMWT H    +L+E  W   + G  +++L+            WNK  FG++  ++ 
Sbjct: 5   FKFLKMWTLHDSCQKLIEDCWNVRVLGSPLYVLSSKLKV-------WNKDVFGNILIQVT 57

Query: 262 TKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQKSRAKMDLEYDRNA 441
              K L D+Q +      N+ L       ++ ++  LQ++E  W +K++ K  +  DRN 
Sbjct: 58  QAEKKLSDIQNHINTSGHNDNLMNAEKIAQTNLDLALQKQETFWVEKAKLKWHVGGDRNT 117

Query: 442 KYYHAL 459
           KY+H L
Sbjct: 118 KYFHRL 123



 Score = 57.0 bits (136), Expect = 6e-06
 Identities = 26/52 (50%), Positives = 31/52 (59%)
 Frame = +3

Query: 615 MP*TITQAENGALIQTPTPDEIKRAVFYLNPDSAPGPDGFNGCFFQYCWSIV 770
           +P  +    N  L   PT +E+K AVF LN D APGPD F  CFFQ  W+IV
Sbjct: 161 IPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIV 212


>emb|CAN72278.1| hypothetical protein VITISV_043409 [Vitis vinifera]
          Length = 1106

 Score = 48.9 bits (115), Expect(2) = 8e-11
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
 Frame = +1

Query: 220 WNKHTFGHLGTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*---ESKVENLLQQEEML 390
           WNK +F  L  +   K  +L DL     ++      + +++Q    + ++E L+ +EE+ 
Sbjct: 644 WNKVSFRELNER---KKNILNDLANLDAIEQVGGLTSDLLVQSALRKGELEELILREEIH 700

Query: 391 WKQKSRAKMDLEYDRNAKYYHALVNNTVNHY*VQ----ELGCGYS*STGRDWRLYG 546
           W+QK R K   E D N+K++H + N   N   ++    E G  Y+  TG  W + G
Sbjct: 701 WRQKVRVKWVKEGDCNSKFFHKVANGRRNRKFIKVLENESGLLYASPTGESWSIEG 756



 Score = 44.3 bits (103), Expect(2) = 8e-11
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 639 ENGALIQTP-TPDEIKRAVFYLNPDSAPGPDGFNGCFFQYCWSIV 770
           E+ + + +P T +EI +A+F L+ D A GPDGF    FQ CW ++
Sbjct: 765 ESASRLDSPFTEEEISKAIFQLDRDKASGPDGFTITVFQDCWDVI 809


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 39/131 (29%), Positives = 63/131 (48%)
 Frame = +1

Query: 61  SKTSNAPFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXXHWNKHTFG 240
           +K+   PFRF KMW T   +  LV+++W     G  +F   Q           WNK  FG
Sbjct: 240 NKSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINSKEWNKTQFG 299

Query: 241 HLGTKIATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENLLQQEEMLWKQKSRAKMD 420
           ++  ++    + LE++Q N  +D +N +L        +K   LL+     WKQK ++   
Sbjct: 300 NIFRQLRQVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYNTTYWKQKCKSDFM 359

Query: 421 LEYDRNAKYYH 453
           +  D N+K+YH
Sbjct: 360 VLGDTNSKFYH 370



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 26/55 (47%), Positives = 37/55 (67%)
 Frame = +3

Query: 609 NLMP*TITQAENGALIQTPTPDEIKRAVFYLNPDSAPGPDGFNGCFFQYCWSIVG 773
           NL+   +++A+N  L    +P+EIK AVF L PD +PGPDGF   FFQ  W+++G
Sbjct: 426 NLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIG 480


>emb|CAN65484.1| hypothetical protein VITISV_029474 [Vitis vinifera]
          Length = 1882

 Score = 70.1 bits (170), Expect = 7e-10
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
 Frame = +1

Query: 64   KTSNAPFRFFKMWTTHPGFMELVEQSW----GESITGHSIFILTQXXXXXXXXXXHWNKH 231
            K    PFRF  MW  HP F E   + W    G    GH      Q           WNK 
Sbjct: 898  KWGPTPFRFENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKV---WNKA 954

Query: 232  TFGHLGTKIATKTKLLEDLQVNF-----ELDSSNEALAGMVLQ*ESKVENLLQQEEMLWK 396
            +FG L  +   K  +L DL VNF     E   S+E LA   L+ + ++E L+ +EE+ W+
Sbjct: 955  SFGELSKR---KEDILSDL-VNFDSLEQEGGLSHELLAQRALK-KGELEELILREEIHWR 1009

Query: 397  QKSRAKMDLEYDRNAKYYHALVNNTVNHY*VQEL 498
            QK+R K   E D N++++H + N   N   ++EL
Sbjct: 1010 QKARVKWVKEGDCNSRFFHKVANGRRNRKFIKEL 1043