BLASTX nr result

ID: Coptis25_contig00011338 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011338
         (509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like ex...    86   2e-15
gb|AFK44021.1| unknown [Medicago truncatula]                           84   1e-14
ref|XP_003627707.1| hypothetical protein MTR_8g036790 [Medicago ...    84   1e-14
ref|XP_002323311.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14
ref|XP_002283404.1| PREDICTED: uncharacterized protein LOC100252...    83   2e-14

>ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like exonuclease 2-like
           [Cucumis sativus]
          Length = 1159

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 41/60 (68%), Positives = 50/60 (83%)
 Frame = +3

Query: 78  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVESLETIVRHMIVYSSRAYPRIRYGCSRILAS 257
           MLQLFFAVAFSAVPLTLYVPP+RSL+LFVE+LE ++ H  +++ RAYPR R   SR+ AS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60


>gb|AFK44021.1| unknown [Medicago truncatula]
          Length = 67

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = +3

Query: 78  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVESLETIVRHMIVYSSRAYPRIRYGCSRIL 251
           MLQLFF VAFS VPLTLY+PP+RSLNLFVE++E+++R    YS+R YPR+R   SR+L
Sbjct: 1   MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRML 58


>ref|XP_003627707.1| hypothetical protein MTR_8g036790 [Medicago truncatula]
           gi|355521729|gb|AET02183.1| hypothetical protein
           MTR_8g036790 [Medicago truncatula]
          Length = 78

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = +3

Query: 78  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVESLETIVRHMIVYSSRAYPRIRYGCSRIL 251
           MLQLFF VAFS VPLTLY+PP+RSLNLFVE++E+++R    YS+R YPR+R   SR+L
Sbjct: 1   MLQLFFTVAFSVVPLTLYIPPIRSLNLFVETMESVMRESTTYSNRIYPRLRIAWSRML 58


>ref|XP_002323311.1| predicted protein [Populus trichocarpa] gi|222867941|gb|EEF05072.1|
           predicted protein [Populus trichocarpa]
          Length = 66

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +3

Query: 78  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVESLETIVRHMIVYSSRAYPRIRYGCSR 245
           MLQLFFAVAFSAVPLTLYVPP+RSLNLFVE++E ++R   +Y+ RAYPRIR   SR
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETMEDVLRQTSLYTVRAYPRIRLVFSR 56


>ref|XP_002283404.1| PREDICTED: uncharacterized protein LOC100252006 [Vitis vinifera]
          Length = 66

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +3

Query: 78  MLQLFFAVAFSAVPLTLYVPPVRSLNLFVESLETIVRHMIVYSSRAYPRIRYGCSRILAS 257
           MLQL FAVAFSAVPLTLYVPP+RSLNLFVE++ET+ R   VY+  AY R+R   SRIL+S
Sbjct: 1   MLQLLFAVAFSAVPLTLYVPPIRSLNLFVETVETLFRQTAVYTLGAYLRVRLAFSRILSS 60


Top